{"id":"W2884397261","doi":"10.1007/s00438-018-1477-7","title":"The evolution of three siderophore biosynthetic clusters in environmental and host-associating strains of Pantoea","year":2018,"lang":"en","type":"article","venue":"Molecular Genetics and Genomics","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Siderophore; Pantoea; Host (biology); Genetics; Microbiology; Bacteria; Evolutionary biology; Computational biology; Pseudomonas","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001057212,0.00005302723,0.00007219197,0.000007441332,0.0001008001,0.00001432126,0.00006672628,0.0000380066,0.000004285797],"category_scores_gemma":[0.000008904504,0.00002381992,0.00002139982,0.0000337471,0.000146586,0.00000974583,0.00007133007,0.00004472213,4.039635e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002468717,"about_ca_system_score_gemma":0.000004579569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003236877,"about_ca_topic_score_gemma":0.00182759,"domain_scores_codex":[0.9996088,0.00002952317,0.0001393799,0.0000836034,0.00004353346,0.0000951158],"domain_scores_gemma":[0.9998154,0.00003861544,0.00007998318,0.00003714484,0.00001086331,0.00001796688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006227832,0.0000175793,0.01428683,0.000001502415,0.000007941037,2.906241e-7,0.0000960785,0.000003162638,0.9728234,0.00002405824,0.000001153457,0.01273181],"study_design_scores_gemma":[0.0001111584,0.0002760841,0.9080995,0.00001369027,0.00001259625,0.000007132765,0.001424441,0.001476208,0.08780184,0.0003704648,0.0003215218,0.00008536106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987584,0.0009211214,0.00001906522,0.00009677626,0.00002493162,0.00007331528,0.00005883615,0.000001156994,0.00004643992],"genre_scores_gemma":[0.9993595,0.0005019364,0.0001048359,0.00001408158,0.00001039101,7.418491e-7,0.000004229526,6.567088e-7,0.000003653811],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8938127,"threshold_uncertainty_score":0.1019838,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007884716383878713,"score_gpt":0.1842241437388264,"score_spread":0.1763394273549477,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}