{"id":"W2884519569","doi":"10.1186/s13567-018-0553-7","title":"Resilience to infection by Mycobacterium avium subspecies paratuberculosis following direct intestinal inoculation in calves","year":2018,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; University of Guelph","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Ileum; Paratuberculosis; Enteritis; Immune system; Lymph node; Microbiology; Mesenteric lymph nodes; Mycobacterium; Lymph; Immunology; Pathology; Medicine; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001764841,0.0002135814,0.0003447196,0.00091424,0.0002886783,0.0001656264,0.0002031158,0.0001381477,0.0004157978],"category_scores_gemma":[0.002245485,0.0001978034,0.0001147215,0.002041136,0.0002549988,0.0004115827,0.0003358913,0.0005465906,0.0005244535],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004511171,"about_ca_system_score_gemma":0.0001791413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00162226,"about_ca_topic_score_gemma":0.00016407,"domain_scores_codex":[0.9963621,0.0005331495,0.0003753313,0.000660957,0.001062192,0.001006222],"domain_scores_gemma":[0.9980075,0.0005019334,0.00003314522,0.0005161433,0.0004351792,0.0005060578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001199401,0.0002394165,0.4744871,0.0001058695,0.00002105458,0.0002323994,0.0004094265,0.00000118228,0.5088032,0.00001038359,0.01227905,0.002211516],"study_design_scores_gemma":[0.0006876935,0.007027669,0.9275786,0.0005051632,0.000011517,0.0001015315,0.0001227015,0.0002062552,0.04095967,0.00003422699,0.02253226,0.0002327753],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988672,0.0001420142,0.00003964093,0.001337978,0.0002369347,0.0007880687,0.00001370572,0.0000847398,0.008684897],"genre_scores_gemma":[0.99755,0.0001537886,0.0004228583,0.0001407411,0.0004003124,0.0002993279,0.00005216271,0.00003416659,0.0009466812],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4678436,"threshold_uncertainty_score":0.8066187,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08792300854837447,"score_gpt":0.4181519377401022,"score_spread":0.3302289291917277,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}