{"id":"W2884876954","doi":"10.1089/aid.2018.0039","title":"HIV-1 Transmission Clustering and Phylodynamics Highlight the Important Role of Young Men Who Have Sex with Men","year":2018,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Center for AIDS Research, University of Washington; National Institute for Health and Care Research; National Institutes of Health; Vanderbilt University","keywords":"Men who have sex with men; Transmission (telecommunications); Demography; Epidemiology; Logistic regression; Cluster (spacecraft); Cohort; Medicine; Viral phylodynamics; Psychological intervention; Human immunodeficiency virus (HIV); Phylogenetic tree; Biology; Virology; Internal medicine; Genetics; Syphilis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007539029,0.0001664395,0.0001807009,0.001048402,0.00064127,0.0005874005,0.0002097173,0.0001700087,0.001456122],"category_scores_gemma":[0.001928826,0.0001446458,0.0001842014,0.001195132,0.0003863607,0.0005648284,0.00054286,0.0002486629,0.0001044967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006062452,"about_ca_system_score_gemma":0.0003966152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03467502,"about_ca_topic_score_gemma":0.04877347,"domain_scores_codex":[0.9995899,0.0002175801,0.00001608478,0.00007520255,0.00005461609,0.00004669664],"domain_scores_gemma":[0.9992348,0.0001780873,0.000401737,0.00005937911,0.00006586931,0.00006011138],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003203181,0.00001495256,0.9856036,0.00001844102,0.00005336998,0.00004944868,0.0005002958,0.0007398701,0.0008192619,0.0003222096,0.0001670366,0.0116794],"study_design_scores_gemma":[9.548783e-7,0.00002311152,0.9966705,0.00001232558,0.000008741843,0.00009655787,0.0004615777,0.001895289,0.00009596015,0.0003366519,0.0003944971,0.000003867614],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970994,0.0003904359,0.001127181,0.0001701378,0.000001742408,0.00001280334,0.0002312244,0.000007420153,0.0009597147],"genre_scores_gemma":[0.998941,0.0001632482,0.0005817655,0.00003250979,0.000005245874,0.000005095047,0.0001385096,0.000002120509,0.0001305368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03467502,"threshold_uncertainty_score":0.06894636,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01968390431100856,"score_gpt":0.2989965523336588,"score_spread":0.2793126480226502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}