{"id":"W2884964325","doi":"10.1097/qad.0000000000001912","title":"Extensive host immune adaptation in a concentrated North American HIV epidemic","year":2018,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of Regina; Public Health Agency of Canada; University of Saskatchewan; Saskatchewan Disease Control Laboratory; Simon Fraser University; AIDS Vancouver","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Human immunodeficiency virus (HIV); Virology; Host (biology); Adaptation (eye); Immune system; Immunology; Medicine; Biology; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005287114,0.0001695989,0.0002358062,0.0009020293,0.00128952,0.0009188075,0.0004520939,0.0002360633,0.001414909],"category_scores_gemma":[0.001023605,0.0001671589,0.0001745863,0.002451282,0.0006720543,0.0002743545,0.0007955168,0.0003244343,0.0001115858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003594339,"about_ca_system_score_gemma":0.005819639,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.7452145,"about_ca_topic_score_gemma":0.8917863,"domain_scores_codex":[0.999608,0.00008309705,0.00001987649,0.0001095578,0.00006971097,0.000109744],"domain_scores_gemma":[0.9995391,0.00005153952,0.0001374051,0.0000412789,0.0001422494,0.00008845869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006437108,0.00001796138,0.991043,0.00002980398,0.00009398667,0.0001389335,0.0007737444,0.0003279772,0.001396639,0.0001439252,0.0003964553,0.005573274],"study_design_scores_gemma":[0.000002138655,0.000007093524,0.9979068,0.00001138238,0.00001383636,0.00005305566,0.001279835,0.0002275245,0.00005485056,0.00004378873,0.000396171,0.000003577231],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983813,0.0002346649,0.00009855683,0.0001025619,0.000003119767,0.00001134975,0.0004338811,0.000005399271,0.0007292574],"genre_scores_gemma":[0.9989973,0.0002299801,0.0001589179,0.00007710549,0.000003529765,0.000007347308,0.000367693,0.000001959042,0.0001561263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7452145,"threshold_uncertainty_score":0.5125721,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01787071514431753,"score_gpt":0.2736400479763904,"score_spread":0.2557693328320729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}