{"id":"W2884982226","doi":"10.1128/aem.00970-18","title":"Assessment of Rumen Microbiota from a Large Dairy Cattle Cohort Reveals the Pan and Core Bacteriomes Contributing to Varied Phenotypes","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":180,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Earmarked Fund for China Agriculture Research System; National Natural Science Foundation of China","keywords":"Rumen; Biology; Dairy cattle; Population; Cohort; Animal science; Food science; Fermentation; Medicine; Environmental health; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001600715,0.0001376616,0.0002573437,0.000008318933,0.00026585,0.00001323733,0.0001170929,0.00009591691,0.0003064259],"category_scores_gemma":[0.00000498246,0.00005676582,0.00002631956,0.00005069062,0.0005006109,0.00001796531,0.0002896224,0.00007043289,0.00001785446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001717999,"about_ca_system_score_gemma":0.000002663616,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008772982,"about_ca_topic_score_gemma":0.00005532631,"domain_scores_codex":[0.99911,0.0000503111,0.0001888712,0.0003274445,0.00002541883,0.0002978973],"domain_scores_gemma":[0.9996335,0.0001488811,0.00009019342,0.00006487717,0.000006247929,0.00005628674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003033988,0.00006739247,0.1139116,0.000001950677,0.00002568507,2.230817e-7,0.00008060967,2.6839e-8,0.8837283,0.0003662592,0.0001688255,0.001618849],"study_design_scores_gemma":[0.0002812988,0.000234717,0.9627917,0.000006513835,0.00001871117,0.000006898641,0.000494166,0.000001332818,0.02892561,0.0003464931,0.006772374,0.0001201772],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975792,0.0001127661,0.000005591912,0.0005114451,0.00004746013,0.0003204656,0.001186838,0.00001030807,0.000225892],"genre_scores_gemma":[0.9980178,0.00007047768,0.0001112935,0.0009299145,0.00009322834,0.00001981681,0.0007237726,0.000001466331,0.00003225416],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8548027,"threshold_uncertainty_score":0.3355148,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00819085843253738,"score_gpt":0.2105188879513255,"score_spread":0.2023280295187881,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}