{"id":"W2885025183","doi":"10.1093/gbe/evy175","title":"Exploring the Limits and Causes of Plastid Genome Expansion in Volvocine Green Algae","year":2018,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Japan Society for the Promotion of Science; Natural Sciences and Engineering Research Council of Canada; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Plastid; Biology; Multicellular organism; Chloroplast DNA; Genome; Evolutionary biology; Mutation rate; Green algae; Lineage (genetic); Alexandrium tamarense; Noncoding DNA; Genetics; Algae; Gene; Chloroplast; Botany; Ecology; Algal bloom","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002226166,0.0001324369,0.0002461042,0.000827859,0.0004293726,0.0004827246,0.0002831735,0.0003468541,0.000371033],"category_scores_gemma":[0.0005916283,0.0001531749,0.0002338801,0.0006144175,0.0005479588,0.0005345945,0.0004217861,0.000339443,0.00008065623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004317496,"about_ca_system_score_gemma":0.0001771769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001896064,"about_ca_topic_score_gemma":0.004261145,"domain_scores_codex":[0.9998162,0.00002531043,0.0000165388,0.00008533621,0.00003146813,0.00002515972],"domain_scores_gemma":[0.9995401,0.0001514194,0.0001777587,0.00003652079,0.00003839297,0.00005579371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003512637,0.00001844803,0.2637819,0.0001769237,0.00008573465,0.0007436238,0.001516327,0.001015675,0.7169202,0.001081812,0.00005724349,0.01425095],"study_design_scores_gemma":[0.000004891436,0.00007955347,0.9836302,0.00002209375,0.00003819373,0.000613837,0.001528387,0.001509257,0.00967282,0.0007821412,0.002102533,0.00001611826],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987385,0.000476735,0.0003178782,0.00002075716,0.000001313791,0.000001411947,0.00007967831,0.000007464765,0.0003563508],"genre_scores_gemma":[0.9991435,0.000258241,0.0002693248,0.00002062793,0.000002761252,0.000003537142,0.000171071,0.000005158492,0.000125881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001896064,"threshold_uncertainty_score":0.003770113,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03874915318882446,"score_gpt":0.2386316434013431,"score_spread":0.1998824902125186,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}