{"id":"W2885066505","doi":"10.1089/aid.2015.0039","title":"High Prevalence of HIV Low Abundance Drug-Resistant Variants in a Treatment-Naive Population in North Rift Kenya","year":2015,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Drug resistance; Population; Pyrosequencing; Medicine; Amplicon; Virology; Biology; Internal medicine; Polymerase chain reaction; Genetics; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006098826,0.000192393,0.0004435956,0.0007253696,0.00009350084,0.00003226195,0.0001140402,0.00006609003,0.00006339724],"category_scores_gemma":[0.0001935246,0.0001529321,0.00003895562,0.0006274409,0.0001998512,0.0001992994,0.00006795639,0.0002097259,0.000027007],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005081279,"about_ca_system_score_gemma":0.0002609157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003762102,"about_ca_topic_score_gemma":0.007749346,"domain_scores_codex":[0.997786,0.0001989251,0.0004311891,0.0004209279,0.0006588936,0.0005040752],"domain_scores_gemma":[0.9990246,0.0001454696,0.00007997199,0.0003124575,0.0001857291,0.0002518027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008131192,0.0008239924,0.9932138,0.0002308561,0.00005184114,0.0002047351,0.002051024,0.000003565613,0.0002557899,0.001191743,0.0003114321,0.0008481458],"study_design_scores_gemma":[0.004684213,0.001449242,0.991104,0.0003891146,0.00002253518,0.000003121978,0.0003426594,0.000009335388,0.0008959634,0.0007888892,0.0001860021,0.0001249397],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979535,0.0006625922,0.000002027914,0.0001681693,0.00002199938,0.000689857,0.00004866888,0.00001884824,0.0004343495],"genre_scores_gemma":[0.9903438,0.0003928028,0.0004569328,0.00001092671,0.00004498806,0.00007839865,0.00008072716,0.00001991901,0.008571501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008137151,"threshold_uncertainty_score":0.623639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06040174943836,"score_gpt":0.3468720946724733,"score_spread":0.2864703452341133,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}