{"id":"W2885067790","doi":"10.1101/391565","title":"A widespread coral-infecting apicomplexan contains a plastid encoding chlorophyll biosynthesis","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; FP7 People: Marie-Curie Actions; Killam Trusts; Tula Foundation","keywords":"Biology; Plastid; Symbiodinium; Apicoplast; Dinoflagellate; Obligate; Obligate parasite; Phototroph; Lineage (genetic); Zooxanthellae; Endosymbiosis; Evolutionary biology; Apicomplexa; Peridinin; Botany; Algae; Photosynthesis; Symbiosis; Gene; Chloroplast; Genetics; Host (biology); Plasmodium falciparum","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001028157,0.0004373659,0.0002161703,0.0009683514,0.0005189807,0.0006691878,0.0002420535,0.0003361348,0.001795689],"category_scores_gemma":[0.0003782046,0.0001778062,0.000243718,0.0008898549,0.0002757585,0.0005208717,0.000649062,0.0002943896,0.0006031587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002547068,"about_ca_system_score_gemma":0.0002494068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001640888,"about_ca_topic_score_gemma":0.00158663,"domain_scores_codex":[0.99983,0.00001202728,0.00001831214,0.00006648993,0.00004888798,0.00002427511],"domain_scores_gemma":[0.9996468,0.00003086103,0.0001668448,0.00003881519,0.00006370109,0.00005293057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001535115,0.00003384296,0.07844771,0.0003010906,0.00004245355,0.0003239665,0.0003894622,0.0001085885,0.8896803,0.0003527459,0.0003918802,0.02977454],"study_design_scores_gemma":[0.00002037729,0.0002515337,0.8209708,0.0001110284,0.0001137812,0.004749948,0.0008462704,0.001221646,0.1319662,0.0004510643,0.03925296,0.00004434447],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898483,0.002764507,0.002375053,0.0001160054,0.00001356131,0.00003520141,0.002137851,0.0001199379,0.002589576],"genre_scores_gemma":[0.9927748,0.001136213,0.00238751,0.00006909842,0.00001086237,0.0000207938,0.002244858,0.00001878687,0.001336919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001795689,"threshold_uncertainty_score":0.006007135,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01641887386909468,"score_gpt":0.207931254817214,"score_spread":0.1915123809481193,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}