{"id":"W2885949455","doi":"10.1158/1538-7445.am2018-225","title":"Abstract 225: Tumor-infiltrating CD8-positive T-lymphocytes in tubo-ovarian high-grade serous cancer are associated with multiple germline variants in 22q12.1 in a genome-wide association analysis","year":2018,"lang":"en","type":"article","venue":"Cancer Research","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Germline; Genome-wide association study; Ovarian cancer; Tumor-infiltrating lymphocytes; Serous fluid; Biology; CD8; Oncology; Cancer; Internal medicine; Medicine; Immunology; Genotype; Single-nucleotide polymorphism; Immune system; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003291311,0.00035341,0.0002735993,0.0007736706,0.000495603,0.000608828,0.0003173275,0.0004041947,0.003430435],"category_scores_gemma":[0.000993025,0.0002309883,0.0006596089,0.001004445,0.000255644,0.0001558994,0.0003785118,0.0004418656,0.0001896881],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001528342,"about_ca_system_score_gemma":0.0001280464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002915862,"about_ca_topic_score_gemma":0.004099851,"domain_scores_codex":[0.9997036,0.00006549534,0.00003558758,0.0001176571,0.00003955267,0.00003799994],"domain_scores_gemma":[0.9994494,0.0001232706,0.0001963144,0.00006704516,0.0000465761,0.000117266],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001071711,0.00004424285,0.9837674,0.00003629014,0.0005472247,0.0008774089,0.0001171883,0.0001465596,0.01036434,0.00004679112,0.0003884281,0.002592441],"study_design_scores_gemma":[0.000039174,0.00009824692,0.9970307,0.000006670674,0.000277573,0.001038204,0.00007187555,0.000400388,0.0006083242,0.00004093179,0.0003836867,0.000004199645],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991704,0.0001510677,0.0001914389,0.00002939772,0.000007138327,0.000004060146,0.0002994812,0.00001107164,0.0001358646],"genre_scores_gemma":[0.9994249,0.00003042335,0.0001525438,0.0000160046,0.000007927622,0.00000410678,0.000210768,0.000004634661,0.000148694],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003430435,"threshold_uncertainty_score":0.01147592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02219199917606012,"score_gpt":0.3159344986800157,"score_spread":0.2937424995039556,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}