{"id":"W2886025481","doi":"10.1371/journal.pone.0200632","title":"Geospatial distribution of Mycobacterium tuberculosis genotypes in Africa","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"European Social Fund; Department of Science and Technology, Ministry of Science and Technology, India; National Research Foundation; European Commission; Conseil Régional de Guadeloupe; Wellcome Trust; Medical Research Council; South African Medical Research Council; Wellcome","keywords":"Lineage (genetic); Phylogenetic tree; Tuberculosis; Geography; Genotype; Biology; Mycobacterium tuberculosis; Distribution (mathematics); Evolutionary biology; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003324085,0.00008976025,0.0003857936,0.00008905151,0.0000273948,0.000003298573,0.00007116013,0.0001118358,0.0003906244],"category_scores_gemma":[0.001086153,0.00007661465,0.00005290412,0.0002432168,0.0001536327,0.00004722565,0.00005561563,0.0001646302,0.000160099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008289034,"about_ca_system_score_gemma":0.00005428377,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004660224,"about_ca_topic_score_gemma":0.0001556553,"domain_scores_codex":[0.9987882,0.0001003587,0.0002957086,0.0001961953,0.0002544362,0.0003651426],"domain_scores_gemma":[0.9992613,0.0001048775,0.00005139695,0.0002442054,0.0002108675,0.0001273151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001186101,0.003402833,0.5501974,0.0004320711,0.0004770198,0.00001783118,0.0004900902,7.891823e-7,0.4379071,0.0003401288,0.003538063,0.00201064],"study_design_scores_gemma":[0.0008473234,0.001218095,0.9068361,0.0002151941,0.0001263355,0.000003732293,0.00002650696,0.0008998225,0.08850771,0.0001912827,0.001027821,0.0001000959],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944504,0.0001939588,0.00005303198,0.00276507,0.00002719937,0.0002402095,0.00005480249,0.00002492268,0.002190433],"genre_scores_gemma":[0.9984214,0.0002116899,0.0006158247,0.0001343274,0.000310459,0.00002525005,0.0001413118,0.00001030964,0.0001294018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3566387,"threshold_uncertainty_score":0.4277063,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05191072660846752,"score_gpt":0.2848340126336741,"score_spread":0.2329232860252066,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}