{"id":"W2886025481","doi":"10.1371/journal.pone.0200632","title":"Geospatial distribution of Mycobacterium tuberculosis genotypes in Africa","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"European Social Fund; Department of Science and Technology, Ministry of Science and Technology, India; National Research Foundation; European Commission; Conseil Régional de Guadeloupe; Wellcome Trust; Medical Research Council; South African Medical Research Council; Wellcome","keywords":"Lineage (genetic); Phylogenetic tree; Tuberculosis; Geography; Genotype; Biology; Mycobacterium tuberculosis; Distribution (mathematics); Evolutionary biology; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004342238,0.0001820721,0.0001826778,0.005898854,0.000240575,0.0006429238,0.0001657002,0.0001684944,0.002546074],"category_scores_gemma":[0.002185443,0.00009902762,0.0002631169,0.007678366,0.0001688185,0.000417449,0.0005106484,0.0001077004,0.0002512812],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002109182,"about_ca_system_score_gemma":0.0003443248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007482815,"about_ca_topic_score_gemma":0.008773343,"domain_scores_codex":[0.9996485,0.0001020975,0.0000413687,0.00007452413,0.00009430062,0.00003930953],"domain_scores_gemma":[0.9990529,0.000304378,0.0004435132,0.00005346463,0.00009213532,0.00005349763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003386577,0.00003055471,0.9311473,0.0009426314,0.0003108213,0.00114262,0.001128661,0.001291768,0.003221281,0.0009515815,0.001692089,0.05780203],"study_design_scores_gemma":[0.000009195798,0.00005748832,0.9875203,0.0002627402,0.0001179027,0.001642331,0.001442169,0.001195473,0.0003736513,0.0004155046,0.006949176,0.00001386559],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9806322,0.004120752,0.001031835,0.0002558455,0.00001134279,0.00004969639,0.01109121,0.00005992083,0.002747275],"genre_scores_gemma":[0.9943844,0.001686924,0.0009329485,0.00001701454,0.00001087365,0.00002392038,0.002730934,0.000006234241,0.0002067157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007482815,"threshold_uncertainty_score":0.01487857,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05191072660846752,"score_gpt":0.2848340126336741,"score_spread":0.2329232860252066,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}