{"id":"W2886051755","doi":"10.1186/s12985-018-1033-4","title":"De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1)","year":2018,"lang":"en","type":"article","venue":"Virology Journal","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Botryosphaeria dothidea; Biology; Mycovirus; Transcriptome; Botryosphaeria; Gene; Genetics; Virology; Gene expression; Botany; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001373498,0.0005015117,0.0004441041,0.0004072013,0.0003036585,0.000387976,0.0001549397,0.0002523416,0.0005769444],"category_scores_gemma":[0.0001840162,0.0002390791,0.0005055722,0.0004464817,0.000177376,0.0002638401,0.0003569148,0.0005656476,0.0003359467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002635304,"about_ca_system_score_gemma":0.0002797454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008978773,"about_ca_topic_score_gemma":0.001596386,"domain_scores_codex":[0.999858,0.000007854596,0.000009876518,0.00006045285,0.0000321047,0.00003165599],"domain_scores_gemma":[0.9998189,0.00003973326,0.00005251994,0.00001899518,0.0000389875,0.00003089129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005343556,0.000005950385,0.0004767979,0.00002924466,0.000003155596,0.00002561225,0.00001777768,0.00002861684,0.9987822,0.00001256536,0.00001216335,0.0005523436],"study_design_scores_gemma":[0.00003038429,0.0005827917,0.1687791,0.00003481693,0.0001676221,0.000556409,0.0002942531,0.003196296,0.8204652,0.0001290413,0.005733232,0.00003079524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894839,0.001049776,0.004901442,0.00006100009,0.00002790312,0.00006192787,0.003537388,0.00007935325,0.0007972684],"genre_scores_gemma":[0.9565979,0.001851954,0.01403003,0.0001612961,0.00004066378,0.0002345848,0.02153808,0.0001182058,0.005427315],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008978773,"threshold_uncertainty_score":0.001930058,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01267763247589283,"score_gpt":0.2776281470388221,"score_spread":0.2649505145629293,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}