{"id":"W2886051755","doi":"10.1186/s12985-018-1033-4","title":"De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1)","year":2018,"lang":"en","type":"article","venue":"Virology Journal","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Botryosphaeria dothidea; Biology; Mycovirus; Transcriptome; Botryosphaeria; Gene; Genetics; Virology; Gene expression; Botany; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000275536,0.0001247442,0.0001519597,0.00009594765,0.0001785065,0.00004594656,0.00007464332,0.0001691538,0.00009882725],"category_scores_gemma":[0.00004264028,0.00009792362,0.00003507357,0.00004264556,0.0002020365,0.00002303399,0.00004450268,0.0002472019,0.000003364236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001106035,"about_ca_system_score_gemma":0.00006365514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009126881,"about_ca_topic_score_gemma":0.0003716671,"domain_scores_codex":[0.99911,0.0001530685,0.0001900968,0.0001971504,0.00009362816,0.0002559866],"domain_scores_gemma":[0.9995513,0.00002952054,0.000104174,0.000107977,0.00008790156,0.0001191097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000887922,0.00005327863,0.165516,0.00001086072,0.00005908055,0.00001734328,0.00006454597,0.000003996294,0.8324185,0.00001337251,0.0001778024,0.0007773024],"study_design_scores_gemma":[0.001129405,0.002096167,0.1560182,0.00004584421,0.00003926835,0.003211752,0.00003429051,0.00008810722,0.8279341,0.00005237823,0.009202238,0.0001482196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946958,0.0003659675,0.004343074,0.00007909234,0.0001267006,0.00006947457,0.00002626106,0.000005808417,0.0002877974],"genre_scores_gemma":[0.9975776,0.001580737,0.0002518319,0.0001734591,0.0002988735,0.000006960113,0.000007751359,0.00001366207,0.00008908745],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009497817,"threshold_uncertainty_score":0.3993209,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01267763247589283,"score_gpt":0.2776281470388221,"score_spread":0.2649505145629293,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}