{"id":"W2886606019","doi":"10.1101/384008","title":"One species, two genomes: A critical assessment of inter-isolate variation and identification of assembly incongruence in <i>Haemonchus contortus</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Alberta Innovates; Alberta Agriculture and Forestry","keywords":"Genome; Haemonchus contortus; Biology; Gene; Genetics; Genome project; Caenorhabditis elegans; Nematode; Phylogenetics; Evolutionary biology; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003073097,0.0003353918,0.000469985,0.002262481,0.0009798487,0.00118284,0.0004187943,0.0007901452,0.0008161783],"category_scores_gemma":[0.007657366,0.0002973925,0.0004993658,0.00135548,0.0005650138,0.0005670381,0.0009488848,0.0007551026,0.0001825554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004043801,"about_ca_system_score_gemma":0.0002961832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007323753,"about_ca_topic_score_gemma":0.001856374,"domain_scores_codex":[0.9981387,0.0005351209,0.0002526205,0.0005265753,0.0004138353,0.0001331989],"domain_scores_gemma":[0.992605,0.004045211,0.001465652,0.0006389506,0.0009143733,0.0003309209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009276159,0.0002010224,0.1980852,0.001201093,0.0008434328,0.002110669,0.002753107,0.001823252,0.7718565,0.0009469843,0.0008052352,0.01844589],"study_design_scores_gemma":[0.0000386512,0.0008115865,0.8570772,0.0001731467,0.0009487947,0.005367982,0.003026939,0.01498099,0.1060532,0.001540973,0.009873094,0.0001074238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936627,0.0007957666,0.00408539,0.00008324131,0.00002924878,0.00002873655,0.0006792329,0.00008406261,0.0005516192],"genre_scores_gemma":[0.9844071,0.0001619317,0.01278001,0.0001076322,0.00001696464,0.00002960256,0.002280043,0.0001002669,0.0001164241],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003073097,"threshold_uncertainty_score":0.01625228,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01859108395477373,"score_gpt":0.3037696766570818,"score_spread":0.2851785927023081,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}