{"id":"W2886660089","doi":"10.1101/391276","title":"The genome of the soybean cyst nematode ( <i>Heterodera glycines</i> ) reveals complex patterns of duplications involved in the evolution of parasitism genes","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Biotechnology and Biological Sciences Research Council; Office of Science; Directorate for Biological Sciences; Joint Genome Institute; U.S. Department of Energy; North Central Soybean Research Program; Iowa State University; National Science Foundation","keywords":"Soybean cyst nematode; Biology; Heterodera; Genome; Effector; Genetics; Gene; Nematode; Evolutionary biology; Computational biology; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001008848,0.0002363658,0.0001793765,0.0003942188,0.0001931397,0.0002679555,0.0001025983,0.0002339879,0.0009800765],"category_scores_gemma":[0.0001533211,0.0001653544,0.0002842774,0.0003812923,0.00009859457,0.0001562157,0.0001630665,0.0003062726,0.0004230356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002599412,"about_ca_system_score_gemma":0.000162828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00178956,"about_ca_topic_score_gemma":0.003351209,"domain_scores_codex":[0.999948,0.000003962152,0.000003570958,0.00002602472,0.00001152681,0.00000688464],"domain_scores_gemma":[0.9999081,0.0000206096,0.00003729089,0.000005466994,0.00000904573,0.00001943193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001490974,0.00001755555,0.005169833,0.00009107392,0.00001920129,0.0001567377,0.0001041418,0.000186359,0.9906122,0.00005248037,0.0001162618,0.003324953],"study_design_scores_gemma":[0.00003696793,0.0003797509,0.8429416,0.00006282971,0.0001461803,0.00153378,0.0003533511,0.002486114,0.1396675,0.0002321907,0.01213112,0.0000285517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903362,0.0007414293,0.001715668,0.0000692386,0.00001148066,0.00001892943,0.006161135,0.0001148205,0.0008311184],"genre_scores_gemma":[0.9647081,0.0006698834,0.01160186,0.0001620571,0.00001702843,0.00003404201,0.02110106,0.0001219696,0.001583975],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00178956,"threshold_uncertainty_score":0.003558278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02363146943100674,"score_gpt":0.2190635099053489,"score_spread":0.1954320404743422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}