{"id":"W2886785109","doi":"10.1126/science.aar7191","title":"Shifting the limits in wheat research and breeding using a fully annotated reference genome","year":2018,"lang":"en","type":"article","venue":"Science","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":3376,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Plant Biotechnology Institute; Defence Research and Development Canada; Global Institute for Water Security; University of Saskatchewan","funders":"Bayer CropScience; National Institute of Food and Agriculture; Directorate for Biological Sciences; Saskatchewan Wheat Development Commission; Junta de Andalucía; Genome Prairie; Canada First Research Excellence Fund; Norges Miljø- og Biovitenskapelige Universitet; Russian Science Foundation; Biotechnology and Biological Sciences Research Council; Institut National de la Recherche Agronomique; Universität Zürich; Norges Forskningsråd; Ministry of Agriculture, Forestry and Fisheries; Consiglio per la ricerca in agricoltura e l’analisi dell’economia agraria; Australian Government; Agence Nationale de la Recherche; Ministry of Agriculture - Saskatchewan; Genome Canada; Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; Deutscher Akademischer Austauschdienst; RIKEN; Tokyo University of Agriculture; Centre of Excellence in Plant Energy Biology, Australian Research Council; German Network for Bioinformatics Infrastructure; Bundesministerium für Ernährung und Landwirtschaft; Leibniz-Gemeinschaft; Tel Aviv University; Grantová Agentura České Republiky; Gordon and Betty Moore Foundation; Western Grains Research Foundation; European Commission; Deutsche Forschungsgemeinschaft; Grains Research and Development Corporation; U.S. Department of Agriculture; Canadian Light Source; Agriculture and Agri-Food Canada; National Science Foundation","keywords":"Genome; Biology; Reference genome; Computational biology; Gene; Genetics; Biotechnology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03926003,0.0009640124,0.002324105,0.003285749,0.0008599435,0.005243836,0.002615855,0.002047542,0.001934464],"category_scores_gemma":[0.03280106,0.0005874301,0.0009183427,0.004150842,0.001987759,0.005238106,0.003957363,0.003190112,0.001501151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001722833,"about_ca_system_score_gemma":0.004455208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003885666,"about_ca_topic_score_gemma":0.007103632,"domain_scores_codex":[0.9896974,0.005095324,0.001054228,0.001951253,0.001748488,0.0004532102],"domain_scores_gemma":[0.9636624,0.01872026,0.001835218,0.00949693,0.004810398,0.00147483],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001518975,0.0002612021,0.03264687,0.006594843,0.0007116437,0.0008940867,0.003946783,0.003566465,0.183946,0.08236478,0.01636494,0.6671834],"study_design_scores_gemma":[0.0002203885,0.001582273,0.1077883,0.01002262,0.0009767232,0.002408514,0.005124225,0.01232485,0.03796236,0.2229721,0.5982791,0.0003385766],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3601785,0.16454,0.3890489,0.04057607,0.002255653,0.000286069,0.01031183,0.002737374,0.03006554],"genre_scores_gemma":[0.561444,0.0570607,0.3444847,0.01057155,0.001304514,0.0005759416,0.01790014,0.0009243007,0.005734173],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.03926003,"threshold_uncertainty_score":0.2076294,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2184897102076533,"score_gpt":0.3545853730436285,"score_spread":0.1360956628359752,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}