{"id":"W2887449055","doi":"10.1016/j.tim.2018.07.002","title":"Direct In Vivo Microbial Transcriptomics During Infection","year":2018,"lang":"en","type":"letter","venue":"Trends in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; Genome Canada","keywords":"Biology; In vivo; Transcriptome; Antimicrobial; Computational biology; Omics; Microbiology; Bioinformatics; Gene; Gene expression; Biotechnology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001851139,0.0004268794,0.0005166449,0.0001799406,0.0004156209,0.001238953,0.00040647,0.00363953,0.005109098],"category_scores_gemma":[0.0046497,0.0002522086,0.0003074565,0.0001315964,0.001190073,0.001005975,0.0009289967,0.008205505,0.002993008],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006009457,"about_ca_system_score_gemma":0.000381491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001730689,"about_ca_topic_score_gemma":0.0004795723,"domain_scores_codex":[0.9992229,0.0002664904,0.0000582578,0.0001188992,0.0002220817,0.0001114429],"domain_scores_gemma":[0.9970738,0.001750158,0.000153712,0.000387169,0.0003454507,0.0002898092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002716313,0.0002241661,0.00341748,0.0006729317,0.00006338189,0.006102528,0.0003941644,0.0002771059,0.1736496,0.02089909,0.6579233,0.1336599],"study_design_scores_gemma":[0.0003186098,0.0004494332,0.004883187,0.0002310686,0.00005628788,0.006155817,0.0004434477,0.00129601,0.1010527,0.02653668,0.8585203,0.00005639157],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.03609442,0.03146318,0.02596479,0.7582776,0.1143802,0.0001242003,0.001121359,0.0009327639,0.03164145],"genre_scores_gemma":[0.3582798,0.02842993,0.01965602,0.4022093,0.1104075,0.0006009167,0.001030839,0.0004903016,0.07889534],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.005109098,"threshold_uncertainty_score":0.01709163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01141939897727863,"score_gpt":0.2601756470453858,"score_spread":0.2487562480681072,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}