{"id":"W2887484107","doi":"10.1158/1538-7445.am2018-923","title":"Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data","year":2018,"lang":"en","type":"article","venue":"Cancer Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre","funders":"","keywords":"Visualization; Genomics; Computer science; Data visualization; Interface (matter); Data science; World Wide Web; Computational biology; Genome; Data mining; Biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.003023919,0.002209413,0.001579818,0.00632246,0.001049788,0.003969993,0.003311097,0.001896865,0.06701339],"category_scores_gemma":[0.007147732,0.001414462,0.001865619,0.005324866,0.0005352864,0.002939107,0.006894161,0.002990796,0.04422943],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001069753,"about_ca_system_score_gemma":0.002244771,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005282286,"about_ca_topic_score_gemma":0.006176317,"domain_scores_codex":[0.9985625,0.0002954159,0.0001721374,0.000246067,0.0005544588,0.0001694502],"domain_scores_gemma":[0.9967181,0.001121574,0.0002236021,0.0006378371,0.0006613791,0.0006374698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005695312,0.00008239933,0.00131233,0.001590757,0.0001383831,0.0004100853,0.0003272639,0.001833119,0.009290352,0.00589207,0.9239632,0.05459043],"study_design_scores_gemma":[0.001003362,0.0001052893,0.006708332,0.0008632874,0.0001568298,0.0008610149,0.000187107,0.02168506,0.01209297,0.02511293,0.930882,0.0003418446],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004007865,0.001979798,0.1687518,0.001904342,0.0006384705,0.0007466648,0.3675343,0.4416481,0.01278866],"genre_scores_gemma":[0.02279118,0.001709868,0.2087094,0.001525272,0.0002673671,0.002047168,0.6654508,0.08767532,0.009823583],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.9966889,"threshold_uncertainty_score":0.2241821,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1336962757507731,"score_gpt":0.4486295561516438,"score_spread":0.3149332804008707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}