{"id":"W2887787029","doi":"10.1093/jac/dky303","title":"Genomic characterization of IMP and VIM carbapenemase-encoding transferable plasmids of Enterobacteriaceae","year":2018,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Plasmid; Klebsiella pneumoniae; Enterobacteriaceae; Biology; Replicon; Microbiology; Transformation (genetics); Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002021504,0.0001350009,0.0003287328,0.00007327758,0.0000328375,0.00001793667,0.0001648883,0.0001214056,0.00004718701],"category_scores_gemma":[0.0000114816,0.0001223934,0.0001128813,0.0000617699,0.0002014534,0.0000161584,0.00002110371,0.00006188208,4.516028e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001282025,"about_ca_system_score_gemma":0.00007826871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004179872,"about_ca_topic_score_gemma":0.000003318552,"domain_scores_codex":[0.9990573,0.00003944624,0.0005371039,0.0001403958,0.00008405531,0.0001416821],"domain_scores_gemma":[0.9990974,0.000006861302,0.00048357,0.0001470917,0.0002202749,0.00004482269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000898808,0.0000664212,0.03920692,0.00006184659,0.0001032893,0.000001016144,0.0001723693,8.358605e-7,0.9589716,0.000005425371,0.0001022484,0.0004092582],"study_design_scores_gemma":[0.001128248,0.0005514748,0.06410793,0.0001165842,0.00002229598,0.00006397379,0.00001990099,0.000004611725,0.9324563,0.000004064885,0.001424982,0.00009964798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978674,0.00004192008,0.001547611,0.00008886925,0.0002602297,0.0000901919,0.00002935694,0.000001834186,0.00007259342],"genre_scores_gemma":[0.9967644,0.001326509,0.001372517,0.0001346315,0.0003076335,1.416969e-7,0.00001419722,0.00002381877,0.00005614444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02651527,"threshold_uncertainty_score":0.4991056,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005943343041720253,"score_gpt":0.2250987351225407,"score_spread":0.2191553920808204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}