{"id":"W2888423719","doi":"10.1073/pnas.1806573115","title":"Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa","year":2018,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Child Nutrition and Water Access","field":"Nursing","cited_by":192,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Government of Canada; Institut Pasteur; Canadian Institute for Advanced Research; Nutricia Research Foundation; Howard Hughes Medical Institute","keywords":"Pathophysiology; Biology; Gastrointestinal tract; Feces; Small intestinal bacterial overgrowth; Medicine; Internal medicine; Microbiology; Endocrinology; Irritable bowel syndrome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004460493,0.00008742147,0.0001690138,0.0001101645,0.0001782039,0.00001739889,0.0004245661,0.00003300378,0.00001251455],"category_scores_gemma":[0.0003452711,0.00004939296,0.00004946613,0.0007416007,0.001201301,0.0003831838,0.00007511507,0.00009115319,9.837159e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002677545,"about_ca_system_score_gemma":0.00001673059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001363017,"about_ca_topic_score_gemma":4.912403e-7,"domain_scores_codex":[0.9985439,0.00001317301,0.0003111928,0.0001666299,0.0008563775,0.0001087059],"domain_scores_gemma":[0.9986573,0.00008069866,0.0007435566,0.00000862461,0.0004859883,0.00002384416],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001380064,0.000383593,0.9373298,0.00007617738,0.00001792798,3.581898e-9,0.0008295632,0.000003315286,0.05785279,0.002679195,0.0006561393,0.00003351042],"study_design_scores_gemma":[0.0004396811,0.000208273,0.6336734,0.0003205867,0.00002019367,0.00001388276,0.00006427395,0.0002336063,0.360214,0.004774657,0.000002141919,0.00003523866],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996519,0.00002175059,0.000001118481,0.002360329,0.00001719782,0.0002101831,0.0000477529,0.000006879358,0.0008157903],"genre_scores_gemma":[0.9993458,0.000002931212,0.0003369398,0.0002573758,0.00004232536,0.000001948223,4.882655e-7,0.000004233993,0.000007963622],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3036563,"threshold_uncertainty_score":0.4426242,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02228831183031075,"score_gpt":0.2830417508577206,"score_spread":0.2607534390274098,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}