{"id":"W2888562344","doi":"10.1136/thoraxjnl-2018-211510","title":"Sputum microbiota is predictive of long-term clinical outcomes in young adults with cystic fibrosis","year":2018,"lang":"en","type":"article","venue":"Thorax","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Calgary","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; Calgary Laboratory Services","keywords":"Cystic fibrosis; Medicine; Sputum; Lung transplantation; Microbiome; Internal medicine; Prospective cohort study; Cohort; Respiratory tract infections; Lung; Immunology; Respiratory system; Pathology; Bioinformatics; Biology; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003821754,0.0002000568,0.000646163,0.0001783414,0.00003755653,0.00001398261,0.0001990331,0.000116743,0.0002559874],"category_scores_gemma":[0.0006147931,0.0001421655,0.0001138636,0.0003702581,0.0007503118,0.000113869,0.0001228961,0.0003032064,0.00009433437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008590132,"about_ca_system_score_gemma":0.0001723824,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001882823,"about_ca_topic_score_gemma":0.0005066539,"domain_scores_codex":[0.9980287,0.0001042654,0.0005693369,0.0004442032,0.0004353925,0.000418102],"domain_scores_gemma":[0.998415,0.0003853814,0.0001548471,0.0005434909,0.0003048197,0.000196439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006295365,0.0003751526,0.9822915,0.0002904831,0.0001173105,0.00005854225,0.000594611,5.04258e-7,0.006322371,0.000005067701,0.0004832902,0.003165807],"study_design_scores_gemma":[0.002998048,0.004234691,0.9823039,0.001353476,0.00008174565,0.00005459697,0.0001385501,0.0001262377,0.008504932,0.00002074365,0.0000455674,0.0001375614],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969642,0.0001758107,0.0006728537,0.0002810652,0.0001652192,0.0007096141,0.0001131225,0.00004086716,0.0008772185],"genre_scores_gemma":[0.9924778,0.00005212171,0.006404301,0.0000789983,0.0001753859,0.0000203004,0.0000288665,0.00003163212,0.000730566],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005731447,"threshold_uncertainty_score":0.579734,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01953568228222385,"score_gpt":0.3608009592294043,"score_spread":0.3412652769471805,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}