{"id":"W2888620009","doi":"10.1007/s00425-018-2981-z","title":"Sanger and next generation sequencing in the characterisation of arbuscular mycorrhizal fungi (AMF) in Pancratium maritimum L. (Amaryllidaceae), a representative plant species of Mediterranean sand dunes","year":2018,"lang":"en","type":"article","venue":"Planta","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":false,"ca_institutions":"Western University","funders":"National Eye Institute; Nando and Elsa Peretti Foundation; Università degli Studi di Palermo; Università degli Studi di Napoli Federico II","keywords":"Sanger sequencing; Biology; DNA sequencing; Botany; Glomeromycota; Glomus; Arbuscular mycorrhizal fungi; Amaryllidaceae; Illumina dye sequencing; Ribosomal DNA; Ribosomal RNA; Colonization; Symbiosis; Ecology; Mycorrhiza; Phylogenetics; Gene; Genetics; Horticulture; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003178733,0.0001057455,0.0001961333,0.00004597202,0.00006735115,0.0000385378,0.0001155851,0.00006594685,0.0007847896],"category_scores_gemma":[0.00009907047,0.00004424914,0.00003372615,0.0002130566,0.00002741697,0.0002219912,0.00002755373,0.000107117,0.000009521667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001479884,"about_ca_system_score_gemma":0.000008747336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003176446,"about_ca_topic_score_gemma":0.003076134,"domain_scores_codex":[0.9990154,0.0001597067,0.0003215712,0.0001879743,0.0001716108,0.0001437415],"domain_scores_gemma":[0.9987439,0.0009903602,0.0001428587,0.00005826694,0.00003993336,0.00002467239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001381085,0.00002950124,0.1700241,0.00001852855,0.000007861667,0.00001296111,0.004630865,0.000003536697,0.8235336,0.0001338624,0.001052751,0.0004143245],"study_design_scores_gemma":[0.0002266821,0.0004829279,0.8587924,0.0003729498,0.00003448103,0.0001762418,0.006414579,0.007146534,0.1228818,0.000281348,0.002901771,0.0002882878],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970847,0.0002721779,0.000005736767,0.0003101049,0.0001723011,0.0002360484,0.001098032,0.000005492815,0.0008153827],"genre_scores_gemma":[0.996615,0.001082659,0.00003766755,0.0001021051,0.0003794642,0.00001309625,0.001727872,8.911766e-7,0.00004126805],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7006518,"threshold_uncertainty_score":0.8592896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06697733526002576,"score_gpt":0.2392414599358697,"score_spread":0.172264124675844,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}