{"id":"W2888979881","doi":"10.1038/s41396-018-0263-1","title":"In situ development of a methanotrophic microbiome in deep-sea sediments","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Leibniz-Gemeinschaft; Sixth Framework Programme; Max-Planck-Gesellschaft; Alfred P. Sloan Foundation; Deutsche Forschungsgemeinschaft; Institut Français de Recherche pour l'Exploitation de la Mer; Alberta Innovates - Technology Futures; Universiteit Gent; Woods Hole Oceanographic Institution","keywords":"Biology; In situ; Microbiome; Geomicrobiology; Deep sea; Metagenomics; Ecology; Microbial ecology; Oceanography; Computational biology; Bacteria; Paleontology; Bioinformatics; Fishery; Environmental biotechnology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001224642,0.00021981,0.0001791473,0.0003002137,0.0002825764,0.0004284504,0.000147939,0.0003531321,0.0003006453],"category_scores_gemma":[0.0001182858,0.0001981955,0.0001563354,0.0002847166,0.0002022434,0.0002890892,0.0004038866,0.0002462728,0.000154369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000127316,"about_ca_system_score_gemma":0.0002178643,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002109298,"about_ca_topic_score_gemma":0.003156457,"domain_scores_codex":[0.9998831,0.000009126842,0.000005911691,0.00005574067,0.00001890518,0.00002719761],"domain_scores_gemma":[0.9999337,0.000008906702,0.00002053291,0.000005888347,0.00001187905,0.00001911368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008949948,0.00002202269,0.019285,0.00003550499,0.000009140986,0.00006113575,0.0002699402,0.00008581615,0.9779694,0.00003154216,0.00002014304,0.002120802],"study_design_scores_gemma":[0.0000197303,0.0006580147,0.7914698,0.0000372758,0.00006375766,0.0004487955,0.001630471,0.003444592,0.1991073,0.0002074357,0.002884189,0.00002869784],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984457,0.0001555973,0.0005945754,0.00001240576,0.000005434895,0.000007173323,0.0004634722,0.000009224178,0.0003064949],"genre_scores_gemma":[0.9964049,0.0002037053,0.002280464,0.00003252556,0.000006868913,0.00001750554,0.0005663515,0.000006386639,0.0004813095],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002109298,"threshold_uncertainty_score":0.004194021,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01191876520583683,"score_gpt":0.2394439892773493,"score_spread":0.2275252240715124,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}