{"id":"W2889047874","doi":"10.1105/tpc.18.00281","title":"Turnip Mosaic Virus Uses the SNARE Protein VTI11 in an Unconventional Route for Replication Vesicle Trafficking","year":2018,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université du Québec à Trois-Rivières; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Turnip mosaic virus; Biology; Golgi apparatus; Cell biology; Viral replication; Endoplasmic reticulum; Syntaxin; Secretory pathway; COPI; Plasmodesma; Vesicle; Virology; SNARE complex; Plant virus; Virus; Lipid bilayer fusion; Potyvirus; Biochemistry; Cytoplasm","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006131207,0.00008732796,0.00008583832,0.000008006544,0.0004530997,0.00006572334,0.0003911801,0.00003502426,0.00005507119],"category_scores_gemma":[0.00006707804,0.00002437281,0.00004831381,0.0001570029,0.0001098418,0.00009377568,0.00006242737,0.000097821,0.000033774],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002315777,"about_ca_system_score_gemma":0.00001037062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004445761,"about_ca_topic_score_gemma":0.007781213,"domain_scores_codex":[0.9990821,0.0001124067,0.0001387824,0.0002292654,0.0001842255,0.0002532434],"domain_scores_gemma":[0.9993986,0.0003503492,0.00006518712,0.0001038882,0.00004924769,0.00003275141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001540711,0.00009126437,0.000702004,0.000007015577,0.000008133507,0.000001328087,0.0004108424,0.00001030757,0.99031,0.0002312449,0.002887527,0.005186315],"study_design_scores_gemma":[0.0006728562,0.001300743,0.1232714,0.000118271,0.00003036324,0.00001811479,0.002090124,0.0059956,0.6442546,0.003681854,0.2180682,0.0004978655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959001,0.0001103501,0.000003220552,0.001764231,0.00003444686,0.0006980342,0.001306714,0.00003359035,0.000149333],"genre_scores_gemma":[0.9986531,0.00002332155,0.00002740284,0.0001364182,0.0002775255,0.0001534078,0.000399058,9.373794e-7,0.0003288162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3460554,"threshold_uncertainty_score":0.4342099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08298875524635542,"score_gpt":0.2812927572533195,"score_spread":0.1983040020069641,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}