{"id":"W2889208110","doi":"10.1186/s12879-018-3337-9","title":"Epidemiological and genomic characterization of community-acquired Clostridium difficile infections","year":2018,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Atomic Energy (Canada); Calgary Laboratory Services; University of Regina; University of Calgary","funders":"Calgary Laboratory Services; Canadian Institutes of Health Research; Abbott Laboratories","keywords":"Clostridium difficile; Medicine; Metronidazole; Internal medicine; Medical microbiology; Epidemiology; Vancomycin; Irritable bowel syndrome; Ulcerative colitis; Parasitology; Molecular epidemiology; Antibiotics; Gastroenterology; Disease; Microbiology; Genotype; Virology; Biology; Pathology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002911168,0.0002438587,0.0005385156,0.000259443,0.0004567996,0.00003089989,0.0001023295,0.0001612138,0.0004268482],"category_scores_gemma":[0.001143671,0.000212371,0.0001834952,0.0004362548,0.0006994585,0.00009051647,0.0001932092,0.0002464868,0.00006600754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000128183,"about_ca_system_score_gemma":0.0002241776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002038263,"about_ca_topic_score_gemma":0.00005305438,"domain_scores_codex":[0.9982517,0.0004095467,0.0004810487,0.0002566754,0.0002273086,0.000373764],"domain_scores_gemma":[0.9982166,0.0004759519,0.0001683067,0.00049719,0.0003370052,0.0003048945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004490552,0.001868504,0.4242883,0.0003186551,0.0001108063,0.000004487523,0.0001910254,0.000003549788,0.5690891,0.000341355,0.0004054016,0.002929785],"study_design_scores_gemma":[0.002156057,0.002739715,0.9226406,0.00009012999,0.0002709765,0.0001254753,0.0001386788,0.0003291726,0.06934412,0.0001776923,0.001727419,0.0002600267],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966781,0.0001564511,0.0003860326,0.0001390465,0.0001808088,0.0005743264,0.000170987,0.0002006203,0.001513668],"genre_scores_gemma":[0.9984714,0.0002760046,0.00002754604,0.0001873945,0.0005261377,0.00005957588,0.0002621532,0.00003240568,0.0001573945],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4997449,"threshold_uncertainty_score":0.866024,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0399895013082211,"score_gpt":0.315260815583453,"score_spread":0.2752713142752319,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}