{"id":"W2889416995","doi":"10.1101/402982","title":"Evolution of Bacterial Gene Transfer Agents","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Gene; Recombination; Prophage; Biology; Epistasis; Genetics; Selection (genetic algorithm); DNA; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008158086,0.0005200511,0.0005265998,0.0006284874,0.0007428787,0.001682933,0.0006385761,0.001407952,0.001985292],"category_scores_gemma":[0.002601544,0.0003890616,0.0007114232,0.0004657602,0.0006455324,0.0009582667,0.001276969,0.001288182,0.00074955],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001672385,"about_ca_system_score_gemma":0.0004869707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008975732,"about_ca_topic_score_gemma":0.0005188301,"domain_scores_codex":[0.9994366,0.0002157206,0.00003009697,0.0001320547,0.000105087,0.0000804352],"domain_scores_gemma":[0.999423,0.0002398001,0.00008335221,0.0000815604,0.00007732801,0.00009488931],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0005570582,0.0005164633,0.03634696,0.0005496193,0.0004174008,0.001827464,0.0008299257,0.3897227,0.2977775,0.2071244,0.001845168,0.06248547],"study_design_scores_gemma":[0.0002242414,0.001376765,0.01047279,0.0001559473,0.0002102788,0.001735312,0.0005330081,0.8203982,0.05122446,0.07333669,0.04015273,0.0001795847],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9205879,0.001481678,0.05811828,0.0006496262,0.0001548238,0.0001216389,0.0002336686,0.0001743947,0.01847802],"genre_scores_gemma":[0.9764314,0.0006731373,0.01892194,0.0001208612,0.0000148414,0.0001132947,0.0002381357,0.00005298204,0.003433275],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001985292,"threshold_uncertainty_score":0.01213408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008882679716619853,"score_gpt":0.2380197409532221,"score_spread":0.2291370612366022,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}