{"id":"W2889546754","doi":"10.1016/j.cels.2018.07.004","title":"Open-Source High-Throughput Phenomics of Bacterial Promoter-Reporter Strains","year":2018,"lang":"en","type":"article","venue":"Cell Systems","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canada Foundation for Innovation","keywords":"Phenomics; Gene expression; Escherichia coli; Biology; Computational biology; Reporter gene; Bioreporter; Gene; Synthetic biology; Genetics; Genomics; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003393221,0.0001692881,0.0002995484,0.00003735131,0.00005254396,0.0001036124,0.0005477771,0.0001633065,0.00008548154],"category_scores_gemma":[0.00002155185,0.0001593555,0.00009131363,0.00007554896,0.0001432306,0.000008806264,0.0004144872,0.00004558538,0.00001880263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001965996,"about_ca_system_score_gemma":0.00007066563,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003966232,"about_ca_topic_score_gemma":0.00006663501,"domain_scores_codex":[0.9986866,0.00008255754,0.0004614312,0.0004398059,0.0001162099,0.0002134295],"domain_scores_gemma":[0.998567,0.000004150125,0.0003433538,0.0008375865,0.0001831285,0.0000647948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003049065,0.0000970101,0.0001722191,0.00004774079,0.0000636951,0.00000292691,0.00009235413,0.000003054592,0.98338,0.00001490636,0.01548679,0.0006088177],"study_design_scores_gemma":[0.0003631603,0.0003669844,0.00007248845,0.00001900517,0.0000406792,0.00001361156,0.00007868408,0.00006475383,0.8323241,0.00001136614,0.1664653,0.0001799005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9682521,0.0001131445,0.0123512,0.00001276438,0.0002409735,0.0005549411,0.0000154094,0.00002906399,0.01843043],"genre_scores_gemma":[0.9908795,0.00001871457,0.001079574,0.00003780129,0.0009399722,0.00002816616,0.000216199,0.00004061229,0.006759474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1510559,"threshold_uncertainty_score":0.6498327,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01087376541834045,"score_gpt":0.2542516585450219,"score_spread":0.2433778931266815,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}