{"id":"W2889744605","doi":"10.1158/2159-8290.cd-17-1018","title":"Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus–Host Protein Network","year":2018,"lang":"en","type":"article","venue":"Cancer Discovery","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; National Institutes of Health; National Cancer Institute; Tobacco-Related Disease Research Program","keywords":"Carcinogenesis; Biology; Phenocopy; Cancer; Cancer research; Mutation; Gene; Genetics; Computational biology; Phenotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001017013,0.0001636407,0.0001257987,0.00001278863,0.0003486291,0.00009177111,0.0003162231,0.00008844613,0.00004464212],"category_scores_gemma":[0.00002570906,0.0001188398,0.0000737422,0.0001655337,0.0001363801,0.00001061898,0.0001125763,0.00005936801,0.00001809256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004823121,"about_ca_system_score_gemma":0.00008776306,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003775572,"about_ca_topic_score_gemma":0.001157832,"domain_scores_codex":[0.9989617,0.00004984353,0.0001679752,0.000400291,0.0001217103,0.0002984491],"domain_scores_gemma":[0.9991583,0.000005533715,0.0001016003,0.0005588169,0.0001010434,0.00007466379],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005943469,0.0000412303,0.01132956,0.000008702004,0.00005843998,3.820894e-7,0.00004578419,0.00005799947,0.9254523,0.00005656137,0.06052883,0.002360808],"study_design_scores_gemma":[0.0003491295,0.0001838036,0.02254601,0.00006548661,0.00002443839,9.545479e-7,0.00009056828,0.00001727256,0.6348685,0.00003589981,0.3415388,0.0002791815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932666,0.002870968,0.001429941,0.0008318649,0.0001919921,0.0006122444,0.0002070269,0.0000166379,0.0005726643],"genre_scores_gemma":[0.9881624,0.0001019937,0.0000820022,0.00110038,0.00146885,0.000774422,0.00008061637,0.00003405025,0.008195269],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2905838,"threshold_uncertainty_score":0.4846146,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01621756416986539,"score_gpt":0.2749876092138113,"score_spread":0.2587700450439459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}