{"id":"W2889813947","doi":"10.1186/s12859-018-2350-8","title":"SuperNoder: a tool to discover over-represented modular structures in networks","year":2018,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; Università degli Studi di Cagliari; National Science Foundation","keywords":"Computer science; Network motif; Disjoint sets; Modular design; Theoretical computer science; Motif (music); Network analysis; Artificial intelligence; Complex network; Data mining; World Wide Web; Mathematics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002571966,0.0002778536,0.0002438503,0.0001132703,0.0001020536,0.0001147426,0.0004058967,0.0002831196,0.00005995081],"category_scores_gemma":[0.00007757815,0.0002455882,0.0001127783,0.0002630156,0.0001143064,0.00002584252,0.0004020241,0.0001589558,0.00005812841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003239909,"about_ca_system_score_gemma":0.0000926088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004272842,"about_ca_topic_score_gemma":0.0003834739,"domain_scores_codex":[0.9983378,0.00002600045,0.0006395135,0.0002393554,0.0002087486,0.0005485963],"domain_scores_gemma":[0.998903,0.00001438162,0.0001214552,0.000732585,0.00008199259,0.0001465776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002924935,0.0005949804,0.1234175,0.0008265728,0.0006937282,0.00001854987,0.007733743,0.4997761,0.01879334,0.01315985,0.2214482,0.1106125],"study_design_scores_gemma":[0.001442819,0.0004065133,0.0210139,0.0000522699,0.00001953102,0.00002256506,0.0003317714,0.9254943,0.001919315,0.0006155791,0.04796483,0.0007166112],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5351166,0.0001415832,0.4605393,0.0000614126,0.0004612897,0.0005622675,0.00004545041,0.00002777424,0.003044424],"genre_scores_gemma":[0.9308181,0.00005569986,0.06541625,0.002077616,0.0007982239,0.00003165752,0.0002696057,0.00004162181,0.0004911941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4257182,"threshold_uncertainty_score":0.9999996,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008945370019507059,"score_gpt":0.2444919388931529,"score_spread":0.2355465688736458,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}