{"id":"W2889840983","doi":"10.3389/fmicb.2018.02204","title":"A New Freshwater Cyanosiphovirus Harboring Integrase","year":2018,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Université Savoie Mont Blanc; Tula Foundation","keywords":"Synechococcus; Biology; Siphoviridae; Metagenomics; Lysogenic cycle; Prochlorococcus; Lytic cycle; Genome; Genome size; Cyanobacteria; Integrase; Gene; Genetics; Evolutionary biology; Ecology; Bacteriophage; Virus; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007739522,0.000137736,0.0001650662,0.00007686221,0.00007065298,0.00002118091,0.0002525447,0.0001204667,0.008583166],"category_scores_gemma":[0.0000131968,0.0001232531,0.00005243587,0.0001617217,0.0002525643,0.0001370765,0.0001824807,0.0001911532,0.001688626],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002055254,"about_ca_system_score_gemma":0.00001301588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001927218,"about_ca_topic_score_gemma":0.004439984,"domain_scores_codex":[0.999055,0.00004608047,0.0001968666,0.0003228766,0.00001920208,0.0003599299],"domain_scores_gemma":[0.9996623,0.000008667564,0.00004700117,0.0002044397,0.000005252491,0.0000723586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003195081,0.0000204704,0.007621587,7.596467e-7,0.00000975317,0.000007262511,0.0002041981,0.000001817504,0.7969211,0.000005133521,0.1874037,0.007772294],"study_design_scores_gemma":[0.0004005843,0.00009509356,0.008723011,0.0000152276,0.000009950564,0.00005159936,0.00007455292,0.00003363967,0.1866815,0.0001908518,0.8035193,0.0002046441],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.975461,0.00008725495,0.01432656,0.0003521738,0.003940335,0.0001766193,0.00003765255,0.00005062413,0.005567791],"genre_scores_gemma":[0.8808805,0.00004480068,0.107735,0.001475934,0.0003557669,0.00001345969,0.00004070085,0.00003380993,0.009420008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6161156,"threshold_uncertainty_score":0.9990887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005741890729659623,"score_gpt":0.2174653918475282,"score_spread":0.2117235011178686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}