{"id":"W2889840983","doi":"10.3389/fmicb.2018.02204","title":"A New Freshwater Cyanosiphovirus Harboring Integrase","year":2018,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Université Savoie Mont Blanc; Tula Foundation","keywords":"Synechococcus; Biology; Siphoviridae; Metagenomics; Lysogenic cycle; Prochlorococcus; Lytic cycle; Genome; Genome size; Cyanobacteria; Integrase; Gene; Genetics; Evolutionary biology; Ecology; Bacteriophage; Virus; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007130741,0.0004756525,0.0002288638,0.0004700197,0.0002416499,0.0004451558,0.0001686952,0.0003531345,0.0003949011],"category_scores_gemma":[0.0001544941,0.0001156555,0.0002786031,0.0003585852,0.0001830636,0.0002450665,0.000326592,0.0003135014,0.0001586303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003418108,"about_ca_system_score_gemma":0.0002970692,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001540613,"about_ca_topic_score_gemma":0.001655308,"domain_scores_codex":[0.9998966,0.000006478226,0.000008103677,0.0000311234,0.00002867332,0.0000289383],"domain_scores_gemma":[0.9998744,0.00001609691,0.00003755325,0.000008121391,0.00001838553,0.00004549911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006501885,0.00001942468,0.005138027,0.00005254417,0.000004928558,0.0002917291,0.00006078477,0.00007260797,0.9915073,0.0001030503,0.00005046757,0.002634112],"study_design_scores_gemma":[0.00004792536,0.001154834,0.199771,0.00005761814,0.0001052116,0.00792389,0.0006155423,0.004355233,0.7654546,0.0004946562,0.01994832,0.00007121985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976337,0.0004682908,0.0009630973,0.00003171705,0.00001068725,0.00001927931,0.0003288687,0.00002763881,0.0005165829],"genre_scores_gemma":[0.9904404,0.0005274497,0.004117217,0.00009502215,0.00001344989,0.00002870336,0.002311358,0.00001930181,0.002447108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001540613,"threshold_uncertainty_score":0.003063262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005741890729659623,"score_gpt":0.2174653918475282,"score_spread":0.2117235011178686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}