{"id":"W2889849322","doi":"10.1534/genetics.118.301510","title":"Effects of Transmission Bottlenecks on the Diversity of Influenza A Virus","year":2018,"lang":"en","type":"article","venue":"Genetics","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Transmission (telecommunications); Genetics; Virus; Mutation; Population bottleneck; Viral evolution; Influenza A virus; Genetic diversity; Population; Bottleneck; Host (biology); Virology; Gene; Evolutionary biology; Allele; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009621943,0.00008704914,0.0000920107,0.00002250259,0.00008278948,0.000002228484,0.0002102606,0.0001021533,0.00001848434],"category_scores_gemma":[0.00003952955,0.00006536859,0.00007107761,0.00006966039,0.0002123571,5.240366e-7,0.0001528841,0.00004258924,0.000005649477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004217902,"about_ca_system_score_gemma":0.00003098581,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001002731,"about_ca_topic_score_gemma":0.00001871102,"domain_scores_codex":[0.9994083,0.00005313819,0.0001418235,0.0001409397,0.0001395968,0.0001161896],"domain_scores_gemma":[0.9994827,0.00002285849,0.00007780239,0.0002746086,0.0001005368,0.00004151216],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009847065,0.00008856826,0.00223317,0.00003769463,0.00003786436,2.684107e-7,0.0001981114,0.0001663649,0.992685,0.000180771,0.001201087,0.003072642],"study_design_scores_gemma":[0.0003843193,0.0007978214,0.02236159,0.00001932673,0.0000290498,9.035605e-7,0.0000214143,0.0004454286,0.9621939,0.0001937712,0.01346854,0.00008390774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992159,0.0005680443,0.006284476,0.0000470845,0.00007318455,0.0001407895,0.00001240287,0.000003602811,0.0007114262],"genre_scores_gemma":[0.9982878,0.0002764753,0.0008749833,0.0003635008,0.00006560895,0.000001957585,0.000004840723,0.000008353856,0.0001164529],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03049106,"threshold_uncertainty_score":0.2665654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008727219542781574,"score_gpt":0.2403247528264092,"score_spread":0.2315975332836276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}