{"id":"W2891005426","doi":"10.1186/s12862-018-1246-6","title":"The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen","year":2018,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Wageningen University and Research; Consortium of International Agricultural Research Centers","keywords":"Biology; Genome; Mitochondrial DNA; Obligate; Chytridiomycota; Genetics; Botany; Gene; Ascomycota","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002948653,0.000166084,0.000179151,0.0000574238,0.0002693295,0.000004261612,0.0005279207,0.0002190293,0.00001062072],"category_scores_gemma":[0.0001992714,0.00008602953,0.00009715922,0.0001696419,0.001791948,0.000005044634,0.0003558215,0.0001524636,0.000004975513],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009099786,"about_ca_system_score_gemma":0.0005863794,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001669406,"about_ca_topic_score_gemma":0.0003334384,"domain_scores_codex":[0.9982538,0.0005425776,0.0003741029,0.0003701314,0.0001714718,0.000287962],"domain_scores_gemma":[0.9986779,0.00007737927,0.0002098218,0.0006213064,0.0003485778,0.00006501704],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006309353,0.0000679245,0.001743918,0.00002182438,0.00004469815,3.32953e-7,0.0001391853,0.00002683,0.9959118,0.0007483712,0.000354975,0.000309163],"study_design_scores_gemma":[0.002505304,0.005893187,0.1351177,0.00005551612,0.0001079051,0.0001241953,0.0003706408,0.004279474,0.3677793,0.002919478,0.4802717,0.0005755208],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9659652,0.03166492,0.0003878471,0.0003379158,0.0009868764,0.000417568,0.00009811615,0.000006271937,0.0001353092],"genre_scores_gemma":[0.9955251,0.002344203,0.0005981275,0.00004280692,0.0009896539,0.00002175692,0.0001499155,0.0000145453,0.0003139112],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6281325,"threshold_uncertainty_score":0.6602508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01248199291470857,"score_gpt":0.2376072029548017,"score_spread":0.2251252100400931,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}