{"id":"W2891025859","doi":"10.1002/pep2.24091","title":"Peptides meet ubiquitin: Simple interactions regulating complex cell signaling","year":2018,"lang":"en","type":"article","venue":"Peptide Science","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Ubiquitin; Proteasome; Translation (biology); Peptide; Biology; Computational biology; Protein–protein interaction; Cell biology; Biochemistry; Messenger RNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006379071,0.0001584626,0.0001185963,0.00008797582,0.0007087425,0.0001316227,0.0004921153,0.00004654603,0.0003010933],"category_scores_gemma":[0.0002374732,0.0001553845,0.0000717232,0.0003465287,0.0007915225,0.00002470167,0.00031354,0.00008464972,0.00009824124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002831971,"about_ca_system_score_gemma":0.0001555978,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004660315,"about_ca_topic_score_gemma":0.00009618474,"domain_scores_codex":[0.9984143,0.00004783346,0.0002396979,0.0005408616,0.0002754889,0.0004818212],"domain_scores_gemma":[0.9989736,0.00002833071,0.0001285696,0.0004241358,0.0002809574,0.0001643763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001371954,0.00002176898,0.000779542,0.000009648629,0.000003337383,7.398789e-7,0.0002204778,0.00003824045,0.9951478,0.0002232814,0.002471205,0.001070217],"study_design_scores_gemma":[0.0001587826,0.0002062085,0.0008397771,0.00001990546,0.000005517041,0.00002026313,0.0003666292,0.001101987,0.9651054,0.0005001626,0.03146029,0.0002151528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9324702,0.00003474179,0.002001563,0.0001146784,0.0001670757,0.0001541401,0.00001788748,0.00004126243,0.06499845],"genre_scores_gemma":[0.9869133,0.00000344731,0.01064509,0.0004802317,0.0007080051,0.00001641448,0.00002678856,0.00001790847,0.00118877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06380968,"threshold_uncertainty_score":0.6336396,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03295395660932907,"score_gpt":0.2992816591414784,"score_spread":0.2663277025321493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}