{"id":"W2891402235","doi":"10.1038/s41426-018-0156-4","title":"Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium <i>Treponema pallidum</i> subsp. <i>pertenue</i>","year":2018,"lang":"en","type":"letter","venue":"Emerging Microbes & Infections","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Grantová Agentura České Republiky; Deutsche Forschungsgemeinschaft; Agence Nationale de la Recherche; Deutscher Akademischer Austauschdienst; European Research Council; National Science Foundation","keywords":"Treponema; Syphilis; Biology; Treponematosis; Virology; Geography; Sexually transmitted disease; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.000255946,0.001054828,0.001147514,0.0002690041,0.001373561,0.0003518066,0.0003391482,0.0007337045,0.0005138332],"category_scores_gemma":[0.00008209552,0.0006883857,0.0006122667,0.0008374777,0.0005690093,0.000177918,0.000195709,0.001853662,0.0004925411],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003617751,"about_ca_system_score_gemma":0.0001825228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004136803,"about_ca_topic_score_gemma":0.001492411,"domain_scores_codex":[0.9961991,0.0002013752,0.0006938276,0.001113389,0.0005181836,0.001274165],"domain_scores_gemma":[0.9966555,0.0003645097,0.0006450904,0.001535826,0.0006257734,0.0001732802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003819507,0.0007278119,0.02184883,0.0003195692,0.001270043,0.0004498179,0.0009997488,0.000004013565,0.006721847,0.000001227035,0.9673927,0.0002261719],"study_design_scores_gemma":[0.001573376,0.0006218941,0.02320775,0.001133108,0.001481408,0.0008471607,0.00006785402,0.000003054639,0.006856191,0.000007611785,0.9634534,0.0007471901],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.5556606,0.004838688,0.00006143926,0.4302959,0.001771865,0.002641501,0.0008987951,0.001003861,0.002827371],"genre_scores_gemma":[0.4017196,0.007204085,0.0004019474,0.542973,0.02377815,0.004349444,0.007244272,0.001516252,0.01081328],"genre_candidate":"commentary","genre_consensus":null,"teacher_disagreement_score":0.153941,"threshold_uncertainty_score":0.9999265,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01714929267376839,"score_gpt":0.2565026970860845,"score_spread":0.2393534044123161,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}