{"id":"W2892324919","doi":"10.1371/journal.ppat.1007290","title":"Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance","year":2018,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Hepatitis C virus research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Alberta Innovates; Public Health Agency; Fonds de Recherche du Québec - Santé; Alberta Innovates - Health Solutions; Canadian Institutes of Health Research; Leona M. and Harry B. Helmsley Charitable Trust; Styrelsen för Internationellt Utvecklingssamarbete; National Institutes of Health; Public Health Agency of Canada; American Liver Foundation","keywords":"Innate immune system; Immune system; Immunology; Hepatitis C virus; Virology; Biology; Virus; Transcriptome; Dengue virus; Interferon; Dengue fever; Peripheral blood mononuclear cell; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002404985,0.0001592198,0.0003088884,0.0002328627,0.00009225988,0.00001483868,0.000121869,0.00008811108,0.0001118335],"category_scores_gemma":[0.0001786118,0.0001196787,0.00006910109,0.0006091043,0.0001355305,0.0001192199,0.00004429977,0.0002127117,0.00008315895],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002279059,"about_ca_system_score_gemma":0.0001283135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006814038,"about_ca_topic_score_gemma":0.001800118,"domain_scores_codex":[0.9982231,0.000255802,0.000351413,0.0002916957,0.0005603481,0.0003177044],"domain_scores_gemma":[0.999014,0.00002996251,0.00009578317,0.0004380475,0.000321885,0.0001002988],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.007140557,0.0002347134,0.5255781,0.00001961779,0.00003996579,0.00006968588,0.0004735354,0.000001012308,0.4652196,0.000001607588,0.000001771721,0.001219782],"study_design_scores_gemma":[0.001394236,0.002102052,0.8986315,0.0002394342,0.00006141935,0.00002088697,0.000001606602,0.0001455243,0.09717724,0.00000147948,0.0001131831,0.00011148],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980627,0.000004604444,0.0001273174,0.000172585,0.0001205728,0.001155958,0.0002456872,0.00003228268,0.00007830274],"genre_scores_gemma":[0.999385,0.00006185941,0.0001145227,0.0001197516,0.00006086437,0.00005212711,0.00003916749,0.00004066733,0.0001260371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3730534,"threshold_uncertainty_score":0.4880354,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01339713470153843,"score_gpt":0.2547071970344087,"score_spread":0.2413100623328703,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}