{"id":"W2892332606","doi":"10.1038/s41576-018-0050-x","title":"Computational tools to unmask transposable elements","year":2018,"lang":"en","type":"review","venue":"Nature Reviews Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":254,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill Genome Centre; McGill University","funders":"","keywords":"Transposable element; Biology; Genome; Copying; Computational biology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009764304,0.001153508,0.001283134,0.001621197,0.000193276,0.001257621,0.001560026,0.0008589648,0.003291518],"category_scores_gemma":[0.002924976,0.0004517626,0.000835827,0.001407056,0.0005198333,0.001007469,0.00105982,0.001648642,0.001594062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002644982,"about_ca_system_score_gemma":0.0008222853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001181387,"about_ca_topic_score_gemma":0.002238228,"domain_scores_codex":[0.9997205,0.00005234073,0.00002021544,0.00007069459,0.0001137477,0.00002244563],"domain_scores_gemma":[0.9991068,0.000669219,0.00005046696,0.00005140959,0.00009688587,0.00002517561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009439133,0.00006181108,0.001106662,0.005116096,0.0005001935,0.0001636099,0.00006235299,0.008975248,0.008596241,0.01617763,0.02582788,0.9333179],"study_design_scores_gemma":[0.0001595499,0.0001406579,0.003571329,0.003432207,0.001105712,0.001997763,0.0001228432,0.05718844,0.02372806,0.1030742,0.8052583,0.0002206935],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.005802809,0.6322027,0.3419636,0.002520183,0.001586098,0.0001026825,0.002579522,0.003705091,0.009537393],"genre_scores_gemma":[0.03872226,0.5923615,0.350411,0.002167916,0.0009953945,0.0002991419,0.007374883,0.0007798697,0.006888046],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003291518,"threshold_uncertainty_score":0.01101124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0742192753223862,"score_gpt":0.3401251070949955,"score_spread":0.2659058317726093,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}