{"id":"W2892701381","doi":"10.1111/tpj.14104","title":"Identification of candidate domestication‐related genes with a systematic survey of loss‐of‐function mutations","year":2018,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université Laval","funders":"Grain Farmers of Ontario; Canadian Field Crop Research Alliance; Genome Canada; Syngenta Canada; Government of Canada; Saskatchewan Pulse Growers","keywords":"Domestication; Candidate gene; Biology; Gene; Genome; Genetics; Genomics; Identification (biology); Computational biology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007061669,0.00004366166,0.0001128955,0.0000152466,0.0001158067,0.00001412265,0.0001146476,0.00002310869,0.00003888936],"category_scores_gemma":[0.00009395978,0.00001310879,0.00002212302,0.000277272,0.00009874658,0.00003705568,0.000006966015,0.00003627711,0.000003194882],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000587292,"about_ca_system_score_gemma":0.00001462624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001612055,"about_ca_topic_score_gemma":0.0002930178,"domain_scores_codex":[0.9991854,0.000150543,0.0003862576,0.00005149413,0.0001708869,0.00005536715],"domain_scores_gemma":[0.9986488,0.0002111892,0.0006312828,0.00004424487,0.0004454996,0.00001899237],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002074583,0.0001249521,0.09003739,0.0002449087,0.0001876387,5.280934e-7,0.001052539,0.0002689716,0.9054168,0.0007866265,0.00005299412,0.00161922],"study_design_scores_gemma":[0.0001148386,0.0002644768,0.9739366,0.0002607374,0.00008581304,0.00006558232,0.0003705817,0.0009637846,0.02316248,0.0007300198,0.000002743515,0.00004236755],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991829,0.0001148763,0.000337477,0.00007099821,0.00006560297,0.0001300283,0.00007491407,0.000003141647,0.00002005652],"genre_scores_gemma":[0.9998279,0.00003476806,0.00001726975,0.000003063474,0.00002779723,0.000002603807,0.00005949676,4.781921e-7,0.00002667403],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8838992,"threshold_uncertainty_score":0.08907032,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02398133642605949,"score_gpt":0.2219943506171821,"score_spread":0.1980130141911226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}