{"id":"W2892701381","doi":"10.1111/tpj.14104","title":"Identification of candidate domestication‐related genes with a systematic survey of loss‐of‐function mutations","year":2018,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Université Laval","funders":"Grain Farmers of Ontario; Canadian Field Crop Research Alliance; Genome Canada; Syngenta Canada; Government of Canada; Saskatchewan Pulse Growers","keywords":"Domestication; Candidate gene; Biology; Gene; Genome; Genetics; Genomics; Identification (biology); Computational biology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004767478,0.0004533905,0.0006986727,0.001695941,0.0002923147,0.0004010107,0.0003025531,0.0002713263,0.0007696119],"category_scores_gemma":[0.0004481964,0.0001574421,0.0004778502,0.001360061,0.0002031742,0.0001814288,0.0003853934,0.0003023605,0.0004665113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001295793,"about_ca_system_score_gemma":0.0002893219,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000328356,"about_ca_topic_score_gemma":0.0009458907,"domain_scores_codex":[0.9997743,0.0000234471,0.00002974951,0.00008572751,0.00006153312,0.0000252808],"domain_scores_gemma":[0.9995803,0.0001352131,0.0001162858,0.00005874267,0.00004271897,0.00006666429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002881225,0.00006555062,0.05052172,0.0003672366,0.0001133272,0.001109092,0.0001879249,0.0005509847,0.9168895,0.000196549,0.0002772558,0.02943275],"study_design_scores_gemma":[0.00007624566,0.0005748532,0.8122064,0.0001189911,0.0008006248,0.006800542,0.0005246411,0.006601827,0.1514668,0.0004761,0.0202804,0.00007251494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9829656,0.001483532,0.01048639,0.00005563408,0.00001458169,0.00008690439,0.003826925,0.0001456398,0.000934713],"genre_scores_gemma":[0.9419507,0.002549882,0.0325692,0.0001776136,0.00001953652,0.0001350716,0.021369,0.0001466004,0.001082467],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001695941,"threshold_uncertainty_score":0.002574623,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02398133642605949,"score_gpt":0.2219943506171821,"score_spread":0.1980130141911226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}