{"id":"W2892854479","doi":"10.1128/mra.00853-18","title":"Complete Genome Sequences of Historic Clostridioides difficile Food-Dwelling Ribotype 078 Strains in Canada Identical to That of the Historic Human Clinical Strain M120 in the United Kingdom","year":2018,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Laboratory Directed Research and Development; Los Alamos National Laboratory; National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Clostridium difficile; Clostridioides; Strain (injury); Whole genome sequencing; Biology; Microbiology; Genome; Gene; Genetics; Antibiotics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001367708,0.0002830302,0.0007272679,0.0003635707,0.0001779444,0.00001158831,0.0009078302,0.0001886258,0.0001027324],"category_scores_gemma":[0.0002371684,0.0001946121,0.0001621075,0.001270047,0.0007698706,0.00002436937,0.0002428515,0.0007085548,0.000008354377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001472894,"about_ca_system_score_gemma":0.000985131,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1719439,"about_ca_topic_score_gemma":0.2323978,"domain_scores_codex":[0.9964368,0.000640757,0.001232369,0.0005213124,0.0004644392,0.0007042873],"domain_scores_gemma":[0.9983037,0.0003103254,0.0003427163,0.0007012637,0.0002204237,0.000121577],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002494976,0.0003908415,0.1080339,0.0000763286,0.00008833461,0.00004242023,0.0009829953,0.00008523454,0.8885019,0.00007600923,0.00136738,0.0001052126],"study_design_scores_gemma":[0.01142317,0.01097801,0.2868255,0.001464116,0.0004611777,0.0002845782,0.01231728,0.0002549262,0.04511563,0.00009126231,0.6292948,0.001489579],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963848,0.000306361,0.00001084666,0.0008486917,0.0002377041,0.0008085624,0.001125075,0.000008364461,0.000269578],"genre_scores_gemma":[0.9985674,0.00002200087,0.00003153173,0.0005224901,0.0001861882,0.00001775499,0.0005167711,0.0000215782,0.000114256],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8433862,"threshold_uncertainty_score":0.8335702,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1199217584985732,"score_gpt":0.3375594263426998,"score_spread":0.2176376678441266,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}