{"id":"W2894966346","doi":"10.1128/msphere.00473-18","title":"Biofilm Formation Drives Transfer of the Conjugative Element ICE <i>Bs1</i> in <i>Bacillus subtilis</i>","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biofilm; Bacillus subtilis; Context (archaeology); Bacteria; Horizontal gene transfer; Microbiology; Biology; Extracellular polymeric substance; Multicellular organism; Chemistry; Genetics; Ecology; Gene; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001091157,0.0001098536,0.0001141114,0.000010529,0.0000591315,0.00001195814,0.0001266966,0.0001033985,0.00005878954],"category_scores_gemma":[0.00001657548,0.00007982644,0.00006706922,0.0001074611,0.000161413,0.000007842576,0.00005201544,0.00005621591,0.000006955375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000116325,"about_ca_system_score_gemma":0.00003476284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006546525,"about_ca_topic_score_gemma":0.0009887853,"domain_scores_codex":[0.9992722,0.00006622472,0.0002263405,0.0001689002,0.00008874341,0.0001775772],"domain_scores_gemma":[0.9996052,0.00000594805,0.00005285157,0.0002282016,0.00008127579,0.0000265639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007988013,0.00002810157,0.000996532,0.00001382267,0.0000122005,2.678142e-7,0.000307611,0.000002693836,0.9954954,0.000109177,0.0007228684,0.002231391],"study_design_scores_gemma":[0.0005246827,0.0001849617,0.0034228,0.00003275963,0.000008447396,0.000003136157,0.0003135971,0.00002785133,0.9576113,0.00001609888,0.03775208,0.0001022977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953541,0.0001236086,0.0001391766,0.0002503673,0.0002044716,0.0001991619,0.0000380314,0.000004933695,0.00368621],"genre_scores_gemma":[0.9990256,0.00004452617,0.0001922172,0.0003931119,0.0001327894,0.000004394967,0.00003055822,0.00001000671,0.0001667307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03788417,"threshold_uncertainty_score":0.3255228,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008185504541653364,"score_gpt":0.2173143843875047,"score_spread":0.2091288798458514,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}