{"id":"W2895074862","doi":"10.1038/s41588-018-0237-2","title":"Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.","year":2018,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Sugarcane Cultivation and Processing","field":"Agricultural and Biological Sciences","cited_by":795,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"National High-tech Research and Development Program; Biological and Environmental Research; Program for New Century Excellent Talents in University; Office of Science; Fujian Agriculture and Forestry University; National Natural Science Foundation of China; European Bioinformatics Institute; Fundação de Amparo à Pesquisa do Estado de São Paulo; U.S. Department of Energy; National Science Foundation","keywords":"Biology; Polyploid; Genome; Genetics; Chromosome; Ploidy; Homologous chromosome; Saccharum; Gene; Saccharum officinarum; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005177723,0.0002859252,0.0001579986,0.000315461,0.0002333712,0.0001933779,0.0001866263,0.0001617607,0.001347786],"category_scores_gemma":[0.000100481,0.0001023829,0.000180527,0.0005295416,0.0001061246,0.0001022277,0.0001981489,0.0002859549,0.000341337],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002422393,"about_ca_system_score_gemma":0.000353126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00252629,"about_ca_topic_score_gemma":0.004851697,"domain_scores_codex":[0.9999484,0.000003656859,0.000002976796,0.00001971382,0.00001765097,0.000007580911],"domain_scores_gemma":[0.9999533,0.000008541489,0.00001163996,0.000009570777,0.000006969632,0.000009972669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007649669,0.00001077362,0.0005731283,0.00004506548,0.000009161923,0.00006986731,0.00003695968,0.000110403,0.9947419,0.0001768441,0.00006612224,0.004083375],"study_design_scores_gemma":[0.00007949279,0.0003686339,0.2085138,0.00003437169,0.0002395174,0.002002628,0.0002857751,0.004233652,0.7202538,0.0009719966,0.0629665,0.00004980741],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9754404,0.0006490701,0.008250706,0.00007445143,0.00002482151,0.00006465553,0.01272056,0.0002806564,0.002494702],"genre_scores_gemma":[0.9338901,0.0005032553,0.01024903,0.0000729156,0.00001005001,0.00008310103,0.049864,0.0001248988,0.005202741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00252629,"threshold_uncertainty_score":0.005023181,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01362537895097429,"score_gpt":0.2305070161067176,"score_spread":0.2168816371557433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}