{"id":"W2895074862","doi":"10.1038/s41588-018-0237-2","title":"Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.","year":2018,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Sugarcane Cultivation and Processing","field":"Agricultural and Biological Sciences","cited_by":795,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"National High-tech Research and Development Program; Biological and Environmental Research; Program for New Century Excellent Talents in University; Office of Science; Fujian Agriculture and Forestry University; National Natural Science Foundation of China; European Bioinformatics Institute; Fundação de Amparo à Pesquisa do Estado de São Paulo; U.S. Department of Energy; National Science Foundation","keywords":"Biology; Polyploid; Genome; Genetics; Chromosome; Ploidy; Homologous chromosome; Saccharum; Gene; Saccharum officinarum; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001273842,0.0001114194,0.0001180997,0.000008683789,0.0001982768,0.00002604983,0.0004069973,0.0002143547,0.0007133137],"category_scores_gemma":[0.00008496951,0.00003645366,0.00007084375,0.0003877762,0.0001337137,0.00002486083,0.0000933016,0.0002307601,0.00001704862],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001550147,"about_ca_system_score_gemma":0.000020509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000222103,"about_ca_topic_score_gemma":0.0003607454,"domain_scores_codex":[0.9991208,0.00004447264,0.0001769311,0.0001947735,0.0002572953,0.0002057234],"domain_scores_gemma":[0.9994944,0.00005565188,0.0001132031,0.00009579657,0.0001875673,0.0000533706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003362151,0.00003964023,0.01380245,0.000008841455,0.00001341882,0.000001027774,0.0002209723,0.000002602535,0.9579154,0.0002452467,0.0009162934,0.02680046],"study_design_scores_gemma":[0.0001385307,0.0001639089,0.6382505,0.00001409494,0.00001320724,0.00001594896,0.0001497413,0.00005649902,0.1307004,0.0005670321,0.2297592,0.0001710365],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937538,0.0009884653,0.000002053037,0.002407436,0.0003250133,0.0001184866,0.00002818867,0.00003512663,0.002341452],"genre_scores_gemma":[0.9969577,0.00004129977,0.0002617335,0.001330874,0.0005763115,0.000002257783,0.00002110433,0.000001456248,0.0008073203],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8272151,"threshold_uncertainty_score":0.7810285,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01362537895097429,"score_gpt":0.2305070161067176,"score_spread":0.2168816371557433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}