{"id":"W2895427447","doi":"10.3389/fgene.2018.00421","title":"Association Analysis of Somatic Copy Number Alteration Burden With Breast Cancer Survival","year":2018,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Winnipeg Regional Health Authority","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; University of Manitoba; Manitoba Health Research Council","keywords":"Somatic cell; Breast cancer; Biology; Genetics; Copy-number variation; Cancer; Computational biology; Oncology; Medicine; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007465307,0.0001882727,0.0002335419,0.0009481072,0.0001383509,0.0003498873,0.0002131353,0.0001935932,0.002012816],"category_scores_gemma":[0.003101549,0.0001068296,0.0003532245,0.0009455163,0.0001682384,0.0002043202,0.0003093775,0.000303701,0.0001604525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002096145,"about_ca_system_score_gemma":0.0001872787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001486681,"about_ca_topic_score_gemma":0.001985271,"domain_scores_codex":[0.9996221,0.0001045218,0.0000350233,0.0001310423,0.00006443945,0.00004283237],"domain_scores_gemma":[0.9979739,0.001066869,0.0005383107,0.0002245678,0.00009451761,0.0001019423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003373667,0.00001702345,0.9821951,0.00003361503,0.0002551556,0.00007633943,0.00003626674,0.001416544,0.006383586,0.0001255692,0.0001092458,0.009014176],"study_design_scores_gemma":[0.000005784113,0.0001075836,0.9901608,0.000004232591,0.0001347709,0.0003205111,0.00002522331,0.006436376,0.001837653,0.0003977348,0.0005620952,0.000007186791],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950883,0.0005582335,0.002276992,0.00005766558,0.000008075221,0.000009541194,0.001450853,0.00004736363,0.0005029766],"genre_scores_gemma":[0.99812,0.0001206622,0.0007725118,0.000008871092,0.000006156399,0.000009433472,0.0007465103,0.000006213833,0.0002095998],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002012816,"threshold_uncertainty_score":0.006733537,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007561072430757902,"score_gpt":0.2724775126928597,"score_spread":0.2649164402621018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}