{"id":"W2895632034","doi":"10.1139/gen-2018-0021","title":"Considerations for incorporating real-time PCR assays into routine marine biosecurity surveillance programmes: a case study targeting the Mediterranean fanworm (<i>Sabella spallanzanii</i>) and club tunicate (<i>Styela clava</i>)","year":2018,"lang":"en","type":"article","venue":"Genome","topic":"Marine Ecology and Invasive Species","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Washington Department of Fish and Wildlife; Oregon State University; Wisconsin Department of Natural Resources; Washington State University; National Institute of Water and Atmospheric Research; California Department of Fish and Wildlife; University of Washington; Western Washington University; University of Chicago","keywords":"Biology; Biosecurity; Environmental DNA; Invasive species; Ecology; Real-time polymerase chain reaction; Fishery; Zoology; Biodiversity; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002084583,0.0002947107,0.0003461427,0.00004425756,0.001516914,0.0001405558,0.0002800482,0.0001088353,0.001230471],"category_scores_gemma":[0.0005479385,0.0002250432,0.00006199784,0.0002515192,0.001053688,0.000174008,0.0009985003,0.0002350649,0.0001056528],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001024459,"about_ca_system_score_gemma":0.00003694084,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00294914,"about_ca_topic_score_gemma":0.03718908,"domain_scores_codex":[0.9978017,0.0003107256,0.0005435914,0.0006363558,0.0002137553,0.0004938795],"domain_scores_gemma":[0.9982803,0.0006676889,0.0003054118,0.0005096473,0.00008146342,0.000155507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001807229,0.0009489581,0.9380479,0.00008633089,0.0002458909,0.0006957095,0.02245141,0.00004885139,0.02837017,0.0008021026,0.004540901,0.00358104],"study_design_scores_gemma":[0.01048275,0.01101262,0.8472295,0.00005054637,0.0004444311,0.004272056,0.02692452,0.009839008,0.001816983,0.04113325,0.04293681,0.00385753],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879222,0.00004837465,0.00007698308,0.001476896,0.0001650082,0.001804077,0.00002649072,0.0001032398,0.008376732],"genre_scores_gemma":[0.9915398,0.00003632763,0.007020407,0.000392295,0.0003946855,0.0001755226,0.00004361456,0.0000295658,0.0003677955],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09081841,"threshold_uncertainty_score":0.999783,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02111426298226579,"score_gpt":0.2557199438005877,"score_spread":0.2346056808183219,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}