{"id":"W2895713816","doi":"10.1101/437616","title":"Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft; Natural Sciences and Engineering Research Council of Canada; Universität Bremen; European Commission; North Carolina State University; Gordon and Betty Moore Foundation; Vienna Science and Technology Fund; Deutscher Akademischer Austauschdienst; National Science Foundation","keywords":"Betaproteobacteria; Gammaproteobacteria; Autotroph; Biology; Carbon fixation; Candidatus; Carbon cycle; Evolutionary biology; Gene; Ecology; Bacteria; Genetics; 16S ribosomal RNA; Ecosystem; Actinobacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001180872,0.0003956793,0.0002099081,0.0006167029,0.0003832379,0.000476609,0.0002806604,0.0003601831,0.001104109],"category_scores_gemma":[0.0002985032,0.0002267301,0.0002199303,0.0003068182,0.0003402994,0.0003608636,0.0007558773,0.0003183796,0.0002592898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003615402,"about_ca_system_score_gemma":0.000284927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003314386,"about_ca_topic_score_gemma":0.003558093,"domain_scores_codex":[0.9998206,0.000008579835,0.000007637776,0.00008387164,0.0000322262,0.000047138],"domain_scores_gemma":[0.9997316,0.00003383685,0.00006062197,0.00004961302,0.00006823703,0.0000560046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000109578,0.00002641198,0.05423009,0.00006679774,0.00002158513,0.0001708741,0.0001916118,0.00005777313,0.936554,0.0001212083,0.00003985021,0.008410303],"study_design_scores_gemma":[0.00002181957,0.0004709247,0.7861549,0.00005260772,0.00007634744,0.001398529,0.0009066332,0.001754164,0.2040005,0.000349213,0.004779285,0.00003510956],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976591,0.0002983739,0.0008213945,0.00002967324,0.000007615712,0.00001218434,0.0001260197,0.00003636175,0.001009269],"genre_scores_gemma":[0.9981338,0.00009519808,0.0008024659,0.00002751,0.000003990646,0.000009209433,0.0001876961,0.000006245276,0.0007337595],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003314386,"threshold_uncertainty_score":0.006590188,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005416832799720417,"score_gpt":0.1882339382565576,"score_spread":0.1828171054568372,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}