{"id":"W2895784698","doi":"10.1101/439505","title":"Crop Information Engine and Research Assistant (CIERA) for managing genealogy, phenotypic and genotypic data for breeding programs","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetics and Plant Breeding","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"","keywords":"Phenomics; Germplasm; Computer science; Data management; Database; Data science; World Wide Web; Biology; Genomics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006472817,0.001189333,0.001174941,0.003367795,0.000686953,0.00294053,0.00222778,0.0007411693,0.0271075],"category_scores_gemma":[0.01254838,0.0007944744,0.0006849085,0.002570114,0.0003899539,0.003627573,0.002082014,0.001505813,0.02335596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001140713,"about_ca_system_score_gemma":0.002531179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002585858,"about_ca_topic_score_gemma":0.001596966,"domain_scores_codex":[0.9981126,0.0003206286,0.0002405323,0.0005498045,0.0005935715,0.0001827887],"domain_scores_gemma":[0.9907494,0.002748795,0.0005852254,0.002910464,0.0021078,0.000898271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001596638,0.0004711073,0.01106572,0.0006862492,0.0001528111,0.0006549106,0.0005115731,0.003173637,0.03871515,0.01534351,0.4161303,0.5114983],"study_design_scores_gemma":[0.0007107796,0.0002160527,0.01616726,0.0001646956,0.0001932949,0.001470953,0.0001767731,0.09988073,0.08967254,0.009442725,0.7815707,0.0003335564],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.0174008,0.0006870357,0.4926459,0.001409584,0.0004297197,0.001356364,0.03452526,0.4159063,0.03563912],"genre_scores_gemma":[0.102576,0.000799006,0.777296,0.000957558,0.000442783,0.001300176,0.06988186,0.02052876,0.02621784],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.0271075,"threshold_uncertainty_score":0.09068364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08288805094533813,"score_gpt":0.2665094750357941,"score_spread":0.183621424090456,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}