{"id":"W2895933668","doi":"10.1099/mgen.0.000227","title":"Genomic epidemiology of clinical Campylobacter spp. at a single health trust site","year":2018,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Public Health England; Trent University; Nottingham Trent University","keywords":"Campylobacteriosis; Campylobacter; Typing; Biology; Locus (genetics); Multilocus sequence typing; Genetics; Epidemiology; Single-nucleotide polymorphism; Lineage (genetic); Population; Whole genome sequencing; SNP; Genome; Medicine; Environmental health; Genotype; Gene; Pathology; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005277404,0.0002499688,0.0003306662,0.001169956,0.0008652856,0.0007756826,0.0006287079,0.0004282971,0.002434046],"category_scores_gemma":[0.003058972,0.0003936433,0.0002148699,0.001783432,0.0009151702,0.0003628933,0.001169436,0.0003732668,0.0003592907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002814713,"about_ca_system_score_gemma":0.002863348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2837169,"about_ca_topic_score_gemma":0.4269464,"domain_scores_codex":[0.9986454,0.0003162838,0.000120762,0.0003965589,0.0002551088,0.0002659483],"domain_scores_gemma":[0.9956157,0.0006864468,0.001640992,0.0002805887,0.0008918922,0.000884358],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006153913,0.00002483946,0.991775,0.00005838456,0.00003313164,0.0005355078,0.002293292,0.000170651,0.002119986,0.00005564117,0.0002528524,0.002619132],"study_design_scores_gemma":[0.000003225013,0.0001360204,0.9955047,0.00002196925,0.00001086514,0.0003811603,0.003274411,0.0002417292,0.0001545088,0.00001743299,0.0002469157,0.000006958366],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989892,0.00006559832,0.00008879771,0.00006130597,0.000001996209,0.00002114756,0.0005144831,0.000005567844,0.0002518754],"genre_scores_gemma":[0.9992969,0.00006658293,0.0001634909,0.00002742348,0.000002081637,0.00001288092,0.0002331607,0.000002119063,0.0001953316],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2837169,"threshold_uncertainty_score":0.564131,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1012030663882651,"score_gpt":0.324264546388623,"score_spread":0.2230614800003579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}