{"id":"W2896594081","doi":"10.3791/58536","title":"Growing Magnetotactic Bacteria of the Genus &lt;em&gt;Magnetospirillum&lt;/em&gt;: Strains MSR-1, AMB-1 and MS-1","year":2018,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Geomagnetism and Paleomagnetism Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University","keywords":"Magnetotactic bacteria; Magnetosome; Bacteria; Greigite; Biology; Microbiology; Magnetite; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004166752,0.0003660541,0.0005307355,0.0001022024,0.0002463677,0.00007503072,0.0004594745,0.0002042092,0.0003000837],"category_scores_gemma":[0.0001619385,0.0002784143,0.0002686409,0.0001695228,0.0003897101,0.00004201862,0.0003528461,0.0001558844,0.00000840086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002150807,"about_ca_system_score_gemma":0.0001104924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001844034,"about_ca_topic_score_gemma":0.00004408354,"domain_scores_codex":[0.9976133,0.0002314104,0.0008274365,0.0003610073,0.0005046746,0.000462173],"domain_scores_gemma":[0.9982967,0.00002496517,0.0006906117,0.0004549809,0.0003382174,0.0001945226],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003056902,0.000168516,0.001706193,0.00004113965,0.0002119372,0.00001146077,0.001426715,0.000001100612,0.9908054,0.00004336494,0.002423352,0.002855061],"study_design_scores_gemma":[0.005787805,0.006783634,0.1327507,0.0002042904,0.0002673789,0.0004215867,0.001632377,0.0000220514,0.7684771,0.00008957482,0.08289561,0.0006679178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867565,0.01057312,0.00008950008,0.0001268597,0.001018807,0.0002446981,0.0000307267,0.000007660809,0.001152133],"genre_scores_gemma":[0.9951583,0.0009645796,0.001939453,0.0003382475,0.0007608433,0.000009747435,0.000008815423,0.00004199267,0.0007780357],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2223284,"threshold_uncertainty_score":0.9999668,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01554435083669873,"score_gpt":0.3187433457917488,"score_spread":0.30319899495505,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}