{"id":"W2897571422","doi":"10.1016/j.cbd.2018.10.002","title":"Transcriptional shifts during juvenile Coho salmon (Oncorhynchus kisutch) life stage changes in freshwater and early marine environments","year":2018,"lang":"en","type":"article","venue":"Comparative Biochemistry and Physiology Part D Genomics and Proteomics","topic":"Fish Ecology and Management Studies","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Fisheries and Oceans Canada","funders":"Fisheries and Oceans Canada; Natural Sciences and Engineering Research Council of Canada; Mitacs; Canada Research Chairs; Genome British Columbia","keywords":"Oncorhynchus; Juvenile; Biology; Transcriptome; Smoltification; Chinook wind; Zoology; Fishery; Ecology; Gene expression; Fish <Actinopterygii>; Gene; Salmonidae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001054772,0.0001843382,0.0002596241,0.00001816054,0.0002650789,0.00001595089,0.00007906862,0.0001070042,0.0003215975],"category_scores_gemma":[0.000004696611,0.0001767754,0.00001514802,0.00003394415,0.0008907515,0.00006175438,0.0003366917,0.0001308334,0.00001336851],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003596793,"about_ca_system_score_gemma":0.000004649248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003686046,"about_ca_topic_score_gemma":0.000647485,"domain_scores_codex":[0.9990903,0.00004034667,0.0001664498,0.000421291,0.00004344493,0.0002382085],"domain_scores_gemma":[0.9997059,0.0000224173,0.00007659251,0.0001080589,0.000003188015,0.00008383803],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003967691,0.00007450981,0.2712156,0.00005159728,0.00006045706,0.00000297772,0.001431824,0.00002390026,0.7262906,0.00004986165,0.0003419066,0.00006003277],"study_design_scores_gemma":[0.000736688,0.0001654332,0.915231,0.000007091612,0.00001371075,0.000002117123,0.0001366062,0.0001898609,0.0771947,0.0006156955,0.005490051,0.0002170705],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985726,0.0001059328,0.000009629613,0.0002571905,0.0000425268,0.0002886206,0.00004681422,0.000007204423,0.0006694856],"genre_scores_gemma":[0.9982051,0.0004274742,0.0003416,0.0002090397,0.00009077333,0.00006479077,0.00002808454,0.000006683168,0.0006264225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6490959,"threshold_uncertainty_score":0.720869,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01729871981330357,"score_gpt":0.2242513587151508,"score_spread":0.2069526389018472,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}