{"id":"W2898067021","doi":"10.1128/mra.00848-18","title":"Genome Sequencing of Sub-Arctic Mesomycetozoean Sphaeroforma sirkka Strain B5, Performed with the Oxford Nanopore minION and Illumina HiSeq Systems","year":2018,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Michael Smith Health Research BC; University of British Columbia","funders":"Canadian Institutes of Health Research; National Science Foundation","keywords":"Minion; Nanopore sequencing; Biology; Genome; Strain (injury); Evolutionary biology; Whole genome sequencing; Illumina dye sequencing; The arctic; Genetics; Computational biology; Gene; Oceanography; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004878127,0.0006677505,0.0007884703,0.0008463883,0.0008479321,0.0007134444,0.000254297,0.0004012765,0.001140659],"category_scores_gemma":[0.0004817058,0.0002272318,0.0007370748,0.001402025,0.0001900043,0.0003161164,0.0005676518,0.0006680857,0.001077505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004645304,"about_ca_system_score_gemma":0.001169193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0147271,"about_ca_topic_score_gemma":0.01999254,"domain_scores_codex":[0.9996967,0.00002040489,0.00002711641,0.0001215532,0.00009464178,0.00003959202],"domain_scores_gemma":[0.9997422,0.0000425896,0.00003433609,0.00002766679,0.00009099699,0.00006212976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006150869,0.000064238,0.005281605,0.0005827876,0.00007725546,0.0002578839,0.0004792276,0.0005748169,0.973183,0.0002826329,0.001632184,0.01696919],"study_design_scores_gemma":[0.0002560436,0.001210314,0.6441982,0.0003583911,0.0007177083,0.00172194,0.001453804,0.007732113,0.193624,0.001004769,0.1475608,0.0001620473],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8272015,0.002153419,0.01446838,0.0002205401,0.0001578245,0.000373748,0.1488471,0.0005430352,0.00603447],"genre_scores_gemma":[0.551773,0.002119166,0.05470723,0.0002115728,0.00004251905,0.0004205899,0.3805803,0.000450366,0.009695346],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0147271,"threshold_uncertainty_score":0.02928275,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01041538662923038,"score_gpt":0.1978082725335891,"score_spread":0.1873928859043587,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}