{"id":"W2898140692","doi":"10.1016/j.jtho.2018.08.337","title":"MA03.09 Transcriptome-Wide Association Study Reveals Candidate Causal Genes for Lung Cancer","year":2018,"lang":"en","type":"article","venue":"Journal of Thoracic Oncology","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Lung cancer; Genome-wide association study; Adenocarcinoma; Expression quantitative trait loci; Medicine; Transcriptome; Cancer; Candidate gene; Genetic association; Oncology; Gene; Genetics; Biology; Internal medicine; Gene expression; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007843509,0.0004913028,0.0007137906,0.001520815,0.001000129,0.001171991,0.0007791333,0.0007866473,0.006664154],"category_scores_gemma":[0.00136932,0.0003365449,0.001278944,0.002413474,0.0004388501,0.0002790183,0.0007104543,0.0009804164,0.001164988],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003108102,"about_ca_system_score_gemma":0.000567989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002383068,"about_ca_topic_score_gemma":0.004393717,"domain_scores_codex":[0.9990472,0.0001950183,0.0001000836,0.0003234641,0.0001588348,0.0001753327],"domain_scores_gemma":[0.9987347,0.0004707398,0.0003554608,0.0001377022,0.00009600769,0.000205445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002774767,0.0002085571,0.834928,0.000174631,0.001803368,0.002907026,0.0002556827,0.0005114343,0.1388572,0.000867504,0.003795614,0.01291626],"study_design_scores_gemma":[0.00008117274,0.0001226479,0.9867862,0.00001965417,0.000867913,0.002610517,0.0001869311,0.001744634,0.003866569,0.0005048238,0.003188302,0.00002062003],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989334,0.001862658,0.00157648,0.0005999663,0.0001109729,0.00001399174,0.004787728,0.0001126719,0.001601535],"genre_scores_gemma":[0.99528,0.0002988667,0.0007045117,0.0001899874,0.00005121854,0.00002152657,0.002241351,0.00005511291,0.001157345],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006664154,"threshold_uncertainty_score":0.02229381,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02206461038929712,"score_gpt":0.4175206986930791,"score_spread":0.3954560883037819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}