{"id":"W2898218184","doi":"10.1093/glycob/cwy100","title":"Serine-rich repeat protein adhesins from<i>Lactobacillus reuteri</i>display strain specific glycosylation profiles","year":2018,"lang":"en","type":"article","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Quadram Institute Bioscience; John Innes Foundation","keywords":"Lactobacillus reuteri; Glycosylation; Bacterial adhesin; Biochemistry; Glycosyltransferase; Microbiology; Glycoprotein; Serine; Biology; Chemistry; Escherichia coli; Lactobacillus; Phosphorylation; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003726826,0.0003830116,0.0003336133,0.0001394651,0.0002602809,0.0000706866,0.0004862901,0.0005417606,0.0009682618],"category_scores_gemma":[0.0002155026,0.0003499739,0.0001322358,0.0002881745,0.0004378628,0.00001835819,0.0002965427,0.0002711762,0.0007890196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006102621,"about_ca_system_score_gemma":0.0001555715,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001319458,"about_ca_topic_score_gemma":0.0003561245,"domain_scores_codex":[0.9971614,0.0003190674,0.0005154194,0.001033012,0.0002522444,0.0007188595],"domain_scores_gemma":[0.9982486,0.00002761452,0.0001929705,0.0009811883,0.0003484286,0.0002011922],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000814682,0.00009703881,0.001569484,0.00001487536,0.00006301639,0.00001751612,0.00007656842,0.000003803858,0.9867416,0.0004896207,0.003327653,0.006784122],"study_design_scores_gemma":[0.001120975,0.001331893,0.009923993,0.00002340163,0.00000897935,0.00004092877,0.00006049906,0.00006979652,0.6318775,0.0003890131,0.3547229,0.0004301128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9903815,0.0003563995,0.002090382,0.0005194821,0.000491728,0.001021648,0.0004789697,0.00008359517,0.004576261],"genre_scores_gemma":[0.9893002,0.0001005828,0.002946518,0.0002708831,0.001852172,0.0001699132,0.002273592,0.00005813305,0.003028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3548641,"threshold_uncertainty_score":0.999989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01683612930786069,"score_gpt":0.2664907160980335,"score_spread":0.2496545867901728,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}