{"id":"W2898407871","doi":"10.1016/j.gene.2018.10.061","title":"Both male and female gamete generating cells produce processed pseudogenes in the human genome","year":2018,"lang":"en","type":"article","venue":"Gene","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pseudogene; Biology; Genetics; Retrotransposon; Genome; Chromosome; Gene; Human genome; Autosome; X chromosome; Y chromosome; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002545733,0.0001275045,0.0001118485,0.00002316357,0.0001716792,0.00006440939,0.0002012442,0.00007801716,0.00006210584],"category_scores_gemma":[0.00002285109,0.0000946373,0.00003463437,0.00007403796,0.000173949,0.000005285567,0.00008088238,0.00005711283,0.0000120718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003435808,"about_ca_system_score_gemma":0.000028674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001000064,"about_ca_topic_score_gemma":0.00005841275,"domain_scores_codex":[0.9990609,0.00005943009,0.0002219611,0.0003317448,0.0001117443,0.0002142692],"domain_scores_gemma":[0.9995704,0.000009094853,0.00006456927,0.0002474511,0.00006294679,0.00004547933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000009126394,0.00004874558,0.001571732,0.00002347366,0.000008457369,0.000003310923,0.0003586923,0.000009612922,0.9969741,0.00001783077,0.0001102774,0.0008646648],"study_design_scores_gemma":[0.0003882201,0.0005002117,0.01793626,0.000007536821,0.00001175572,0.00005134778,0.0008713523,0.00003170909,0.974943,0.00007648172,0.004979806,0.0002023377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973462,0.0007090794,0.00006940624,0.0001855298,0.00005802551,0.0001767215,0.000006846449,0.000006726537,0.001441442],"genre_scores_gemma":[0.9949795,0.0001221933,0.001015601,0.00104379,0.0006861038,0.00003112928,0.00002886503,0.00001210293,0.002080702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0220311,"threshold_uncertainty_score":0.3859197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01839553162091535,"score_gpt":0.2687939560623814,"score_spread":0.250398424441466,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}