{"id":"W2898571850","doi":"10.1186/s12985-018-1062-z","title":"Bovine leukemia virus long terminal repeat variability: identification of single nucleotide polymorphisms in regulatory sequences","year":2018,"lang":"en","type":"article","venue":"Virology Journal","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Winnipeg; University of Manitoba","funders":"Krajowy Naukowy Osrodek Wiodacy; Natural Sciences and Engineering Research Council of Canada; National Research Centre","keywords":"Biology; Long terminal repeat; GenBank; Genetics; Bovine leukemia virus; Phylogenetic tree; Regulatory sequence; Genotype; Gene; Virus; Transcription factor; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001222341,0.000179232,0.0004025118,0.0002712531,0.0003181639,0.00001352746,0.0002982228,0.0003239056,0.0004375074],"category_scores_gemma":[0.0001800037,0.0001458727,0.0001080674,0.0001645895,0.001721445,0.0001501499,0.0001095269,0.0004790722,0.0001466795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001799367,"about_ca_system_score_gemma":0.0001408404,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001625197,"about_ca_topic_score_gemma":0.0002435998,"domain_scores_codex":[0.9979,0.0005063761,0.0008126737,0.0003147448,0.00006062647,0.0004055535],"domain_scores_gemma":[0.9988847,0.0001364315,0.000516695,0.000304842,0.0001268096,0.00003052031],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003803575,0.0001375954,0.06536132,0.000007929069,0.0001067596,0.00004526224,0.000536398,0.000002911611,0.9288402,0.0001199191,0.0005368258,0.003924557],"study_design_scores_gemma":[0.001243991,0.001204139,0.4646248,0.00004835567,0.00009532226,0.001935761,0.0001816629,0.00000793867,0.5261312,0.002027804,0.002273356,0.0002257121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950032,0.001884029,0.0002141824,0.0003146517,0.001799194,0.00009339873,0.00001227122,0.00002469869,0.0006543215],"genre_scores_gemma":[0.9983103,0.0001493439,0.00006231622,0.0001325903,0.0002409643,0.000003823704,0.000006772743,0.00001309526,0.001080744],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.402709,"threshold_uncertainty_score":0.6342736,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01227451339250154,"score_gpt":0.2332822227623562,"score_spread":0.2210077093698546,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}