{"id":"W2898571850","doi":"10.1186/s12985-018-1062-z","title":"Bovine leukemia virus long terminal repeat variability: identification of single nucleotide polymorphisms in regulatory sequences","year":2018,"lang":"en","type":"article","venue":"Virology Journal","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Winnipeg; University of Manitoba","funders":"Krajowy Naukowy Osrodek Wiodacy; Natural Sciences and Engineering Research Council of Canada; National Research Centre","keywords":"Biology; Long terminal repeat; GenBank; Genetics; Bovine leukemia virus; Phylogenetic tree; Regulatory sequence; Genotype; Gene; Virus; Transcription factor; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003357758,0.0001146738,0.0002313791,0.0005920259,0.00009633978,0.0003036197,0.0001188694,0.0001942752,0.0003629165],"category_scores_gemma":[0.0005593198,0.00008105053,0.0001693376,0.0005320025,0.0001271334,0.0001049663,0.0001174807,0.0001629258,0.0001360234],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001465577,"about_ca_system_score_gemma":0.0001042789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006809637,"about_ca_topic_score_gemma":0.0009527285,"domain_scores_codex":[0.9997503,0.00005161707,0.00002676755,0.00008006999,0.0000625735,0.00002862393],"domain_scores_gemma":[0.9994873,0.000141896,0.0002350909,0.00003631008,0.00005386278,0.00004556694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006623936,0.00006661568,0.3737596,0.0001240518,0.00009643989,0.0003290085,0.0003738575,0.0005564885,0.6048054,0.0001145429,0.00006266791,0.01904893],"study_design_scores_gemma":[0.000009454196,0.0002824194,0.9800841,0.00001848415,0.00004639896,0.001198726,0.00008880908,0.001258262,0.01604424,0.00008194649,0.0008781127,0.000009053697],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987337,0.0004126343,0.0004308552,0.000004709814,0.000001220488,0.000003108716,0.0002719939,0.000005387041,0.0001364961],"genre_scores_gemma":[0.9985756,0.0001095552,0.0006059887,0.000006488228,0.000002607811,0.000004768404,0.0006086224,0.00000222296,0.00008419295],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006809637,"threshold_uncertainty_score":0.001775801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01227451339250154,"score_gpt":0.2332822227623562,"score_spread":0.2210077093698546,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}